User profiles for H. Phatnani

Hemali Phatnani

New York Genome Center & Columbia University
Verified email at nygenome.org
Cited by 13300

Phosphorylation and functions of the RNA polymerase II CTD

HP Phatnani, AL Greenleaf - Genes & development, 2006 - genesdev.cshlp.org
… We have also positioned the H/ACA snoRNP component Cbf5 such that it can access a
hypothetical intron-encoded small nucleolar RNA (snoRNA) (red recognition sequence indicated …

Astrocytes in neurodegenerative disease

H Phatnani, T Maniatis - Cold Spring Harbor …, 2015 - cshperspectives.cshlp.org
Astrocytes contribute to the maintenance of the health and function of the central nervous
system (CNS). Thus, it is not surprising that these multifunctional cells have been implicated in …

Spatial mapping of cellular senescence: emerging challenges and opportunities

…, F Wu, F Rodriguez, G Barthel, H Chen, H Phatnani… - Nature aging, 2023 - nature.com
Cellular senescence is a well-established driver of aging and age-related diseases. There
are many challenges to mapping senescent cells in tissues such as the absence of specific …

An RNA-sequencing transcriptome and splicing database of glia, neurons, and vascular cells of the cerebral cortex

…, AR Scholze, S O'Keeffe, HP Phatnani… - Journal of …, 2014 - Soc Neuroscience
… dish was then washed three times with 10–20 ml of DPBS and incubated with the corresponding
primary antibodies diluted in 12 ml of DPBS/0.2% BSA solution per dish for at least 2 h

[PDF][PDF] Identification of required host factors for SARS-CoV-2 infection in human cells

…, E Geller, O Danziger, BR Rosenberg, H Phatnani… - Cell, 2021 - cell.com
To better understand host-virus genetic dependencies and find potential therapeutic targets
for COVID-19, we performed a genome-scale CRISPR loss-of-function screen to identify …

[HTML][HTML] TDP-43 loss and ALS-risk SNPs drive mis-splicing and depletion of UNC13A

…, A Gatt, M Hallegger, D Fagegaltier, H Phatnani… - Nature, 2022 - nature.com
Variants of UNC13A, a critical gene for synapse function, increase the risk of amyotrophic
lateral sclerosis and frontotemporal dementia 1 , 2 – 3 , two related neurodegenerative …

[PDF][PDF] A neurodegeneration-specific gene-expression signature of acutely isolated microglia from an amyotrophic lateral sclerosis mouse model

…, H Goodarzi, JT Liao, S O'Keeffe, HP Phatnani… - Cell reports, 2013 - cell.com
… of Siglec-H and Olfml3 by flow cytometry and immunostaining (Figures 2E, 3C, and S2). As
indicated by FACS, the spleen, liver, and lymph node macrophages did not express Siglec-H, …

A novel domain in Set2 mediates RNA polymerase II interaction and couples histone H3 K36 methylation with transcript elongation

KO Kizer, HP Phatnani, Y Shibata, H Hall… - … and cellular biology, 2005 - Taylor & Francis
… 3B shows a 3.5-h exposure, it is noteworthy that a 90-h exposure revealed a potential weak
interaction of Set2 (1-618) to phosphorylated CTD (data not shown); however, it is unclear …

CDK12 is a transcription elongation-associated CTD kinase, the metazoan ortholog of yeast Ctk1

B Bartkowiak, P Liu, HP Phatnani, NJ Fuda… - Genes & …, 2010 - genesdev.cshlp.org
Drosophila contains one (dCDK12) and humans contain two (hCDK12 and hCDK13) proteins
that are the closest evolutionary relatives of yeast Ctk1, the catalytic subunit of the major …

Mutant induced pluripotent stem cell lines recapitulate aspects of TDP-43 proteinopathies and reveal cell-specific vulnerability

…, M Carrasco, HP Phatnani… - Proceedings of the …, 2012 - National Acad Sciences
Transactive response DNA-binding (TDP-43) protein is the dominant disease protein in
amyotrophic lateral sclerosis (ALS) and a subgroup of frontotemporal lobar degeneration (FTLD-…