Rejection of immunogenic tumor clones is limited by clonal fraction

RS Gejman, AY Chang, HF Jones, K DiKun, AA Hakimi… - Elife, 2018 - elifesciences.org
10.7554/eLife.41090.001 Tumors often co-exist with T cells that recognize somatically
mutated peptides presented by cancer cells on major histocompatibility complex I (MHC-I). …

[HTML][HTML] Empirical and rational design of T cell receptor-based immunotherapies

HF Jones, Z Molvi, MG Klatt, T Dao… - Frontiers in …, 2021 - frontiersin.org
The use of T cells reactive with intracellular tumor-associated or tumor-specific antigens has
been a promising strategy for cancer immunotherapies in the past three decades, but the …

Identification of the targets of T-cell receptor therapeutic agents and cells by use of a high-throughput genetic platform

RS Gejman, HF Jones, MG Klatt, AY Chang… - Cancer immunology …, 2020 - AACR
… E and F, Heatmaps of the single amino acid substituted peptides obtained in the A6 (four
replicates) and B7 (three replicates) minigene depletion assay experiments, respectively. Black …

An input-controlled model system for identification of MHC bound peptides enabling laboratory comparisons of immunopeptidome experiments

…, ZEH Aretz, M Curcio, RS Gejman, HF Jones… - Journal of …, 2020 - Elsevier
Abstract Characterization of MHC-bound peptides by mass spectrometry (MS) is an essential
technique for immunologic studies. Many efforts have been made to quantify the number of …

Direct substitution of arylalkynyl carbinols provides access to diverse terminal acetylene building blocks

…, EW Scocchera, S Keshipeddy, HF Jones… - Organic …, 2017 - ACS Publications
To develop next generation antifolates for the treatment of trimethoprim-resistant bacteria,
synthetic methods were needed to prepare a diverse array of 3-aryl-propynes with various …

Prospective identification of cross-reactive human peptide-MHC ligands for T cell receptor based therapies

RS Gejman, MG Klatt, A Chang, HF Jones, CY Oh… - BioRxiv, 2018 - biorxiv.org
T cell receptor (TCR)-based therapeutic cells and agents (eg adoptive T cell 1 , 2 , TCR-engineered
T cells 3 , ImmTACs 4 , TCR mimic antibodies 5 , neoantigen vaccines 6 , 7 ) have …

Continent-wide declines in shallow reef life over a decade of ocean warming

GJ Edgar, RD Stuart-Smith, FJ Heather, NS Barrett… - Nature, 2023 - nature.com
Human society is dependent on nature 1 , 2 , but whether our ecological foundations are at
risk remains unknown in the absence of systematic monitoring of species’ populations 3 . …

[HTML][HTML] Overcome imposter syndrome: Contribute to working groups and build strong networks

…, C Hautecoeur, LM Harper, FJ Heather, TR Jones… - Biological …, 2024 - Elsevier
Scientific working groups bring together experts from different disciplines and perspectives
to tackle the “wicked problems” facing natural systems and society. Yet participants can feel …

Taxonomic composition of mobile epifaunal invertebrate assemblages on diverse benthic microhabitats from temperate to tropical reefs

…, RD Stuart-Smith, SD Ling, FJ Heather… - Marine Ecology …, 2020 - int-res.com
Anthropogenic drivers are flattening reef structure from 3-dimensional habitats composed of
macroalgae and live branching corals towards low-profile turfing algae. Our current …

Using eDNA and SCUBA surveys for detection and monitoring of a threatened marine cryptic fish

…, OJ Johnson, SD Ling, FJ Heather… - Aquatic …, 2023 - Wiley Online Library
Quantification of species’ spatial distributions and population trends is crucial for successful
conservation efforts. Obtaining sufficient population data, however, is often difficult in the …