User profiles for Heetak Lee

Heetak Lee

Bioinformatics Team Leader, Center for Genome Engineering, Institute for Basic Science …
Verified email at ibs.re.kr
Cited by 560

[HTML][HTML] OASIS 2: online application for survival analysis 2 with features for the analysis of maximal lifespan and healthspan in aging research

…, D Lee, H Lee, D Kim, HG Son, JS Yang, SJV Lee… - Oncotarget, 2016 - ncbi.nlm.nih.gov
Online application for survival analysis (OASIS) has served as a popular and convenient
platform for the statistical analysis of various survival data, particularly in the field of aging …

[HTML][HTML] Network-based machine learning in colorectal and bladder organoid models predicts anti-cancer drug efficacy in patients

JH Kong, H Lee, D Kim, SK Han, D Ha, K Shin… - Nature …, 2020 - nature.com
Cancer patient classification using predictive biomarkers for anti-cancer drug responses is
essential for improving therapeutic outcomes. However, current machine-learning-based …

[PDF][PDF] p57Kip2 imposes the reserve stem cell state of gastric chief cells

…, ASB Rocha, JY Park, S Lee, SHS Wu, H Lee… - Cell Stem Cell, 2022 - cell.com
Adult stem cells constantly react to local changes to ensure tissue homeostasis. In the main
body of the stomach, chief cells produce digestive enzymes; however, upon injury, they …

[HTML][HTML] Transcriptomes of the tumor-adjacent normal tissues are more informative than tumors in predicting recurrence in colorectal cancer patients

J Kim, H Kim, MS Lee, H Lee, YJ Kim, WY Lee… - Journal of Translational …, 2023 - Springer
Background Previous investigations of transcriptomic signatures of cancer patient survival
and post-therapy relapse have focused on tumor tissue. In contrast, here we show that in …

Divergence of noncoding regulatory elements explains gene–phenotype differences between human and mouse orthologous genes

SK Han, D Kim, H Lee, I Kim… - Molecular Biology and …, 2018 - academic.oup.com
Mice have been widely used as a model organism to investigate human gene–phenotype
relationships based on a conjecture that orthologous genes generally perform similar …

[HTML][HTML] Linear motif-mediated interactions have contributed to the evolution of modularity in complex protein interaction networks

I Kim, H Lee, SK Han, S Kim - PLoS Computational Biology, 2014 - journals.plos.org
The modular architecture of protein-protein interaction (PPI) networks is evident in diverse
species with a wide range of complexity. However, the molecular components that lead to the …

Intestinal Paneth cell differentiation relies on asymmetric regulation of Wnt signaling by Daam1/2

G Colozza, H Lee, A Merenda, SHS Wu… - Science …, 2023 - science.org
The mammalian intestine is one of the most rapidly self-renewing tissues, driven by stem
cells residing at the crypt bottom. Paneth cells form a major element of the niche …

[HTML][HTML] Energy metabolism and whole-exome sequencing-based analysis of Sasang constitution: a pilot study

HK Kim, H Lee, JH So, SH Jeong, DY Seo… - Integrative Medicine …, 2017 - Elsevier
Background Traditional Korean Sasang constitutional (SC) medicine categorizes individuals
into four constitutional types [Tae-eum (TE), So-eum (SE), Tae-yang (TY), or So-yang (SY)] …

Acquired epithelial WNT secretion drives niche independence of developing gastric cancer

I Teriyapirom, J Kim, H Lee, SR Merker… - bioRxiv, 2023 - biorxiv.org
Recent studies have shed light on the signaling pathways required for gastric tissue
maintenance and how aberrations in these key pathways lead to gastric cancer development. …

An evolution-based machine learning to identify cancer type-specific driver mutations

D Kim, D Ha, K Lee, H Lee, I Kim… - Briefings in …, 2023 - academic.oup.com
Identifying cancer type-specific driver mutations is crucial for illuminating distinct pathologic
mechanisms across various tumors and providing opportunities of patient-specific treatment. …