User profiles for Helena Rasche

Helena Rasche

Onderzoeker in Opleiding, Department Pathology, Erasmus Medical Center
Verified email at erasmusmc.nl
Cited by 4068

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update

…, S Hiltemann, V Jalili, H Rasche… - Nucleic acids …, 2018 - academic.oup.com
Galaxy (homepage: https://galaxyproject.org , main public server: https://usegalaxy.org ) is a
web-based scientific analysis platform used by tens of thousands of scientists across the …

[HTML][HTML] Galaxy and Apollo as a biologist-friendly interface for high-quality cooperative phage genome annotation

J Ramsey, H Rasche, C Maughmer… - PLOS Computational …, 2020 - journals.plos.org
In the modern genomic era, scientists without extensive bioinformatic training need to apply
high-power computational analyses to critical tasks like phage genome annotation. At the …

Galactic Circos: User-friendly Circos plots within the Galaxy platform

H Rasche, S Hiltemann - GigaScience, 2020 - academic.oup.com
Background Circos is a popular, highly flexible software package for the circular visualization
of complex datasets. While especially popular in the field of genomic analysis, Circos …

[HTML][HTML] Apollo: democratizing genome annotation

…, NL Harris, E Yao, H Rasche… - PLoS computational …, 2019 - journals.plos.org
Genome annotation is the process of identifying the location and function of a genome's
encoded features. Improving the biological accuracy of annotation is a complex and iterative …

[HTML][HTML] Galaxy Training: A powerful framework for teaching!

S Hiltemann, H Rasche, S Gladman… - PLoS computational …, 2023 - journals.plos.org
There is an ongoing explosion of scientific datasets being generated, brought on by recent
technological advances in many areas of the natural sciences. As a result, the life sciences …

User-friendly, scalable tools and workflows for single-cell RNA-seq analysis

…, MA Doyle, G Marnier, B Grüning, H Rasche… - Nature …, 2021 - nature.com
To the Editor—As single-cell RNA sequencing (scRNA-seq) becomes widespread, accessible
and scalable computational pipelines for data analysis are needed. We introduce an …

The Planemo toolkit for developing, deploying, and executing scientific data analyses in Galaxy and beyond

…, M van den Beek, B Batut, H Rasche… - Genome …, 2023 - genome.cshlp.org
There are thousands of well-maintained high-quality open-source software utilities for all
aspects of scientific data analysis. For more than a decade, the Galaxy Project has been …

[HTML][HTML] Fostering accessible online education using Galaxy as an e-learning platform

…, C Gallardo-Alba, A Erxleben, H Rasche… - PLoS computational …, 2021 - journals.plos.org
The COVID-19 pandemic is shifting teaching to an online setting all over the world. The Galaxy
framework facilitates the online learning process and makes it accessible by providing a …

Tripal v3: an ontology-based toolkit for construction of FAIR biological community databases

…, A Almsaeed, M Chen, A Bretaudeau, H Rasche… - Database, 2019 - academic.oup.com
Community biological databases provide an important online resource for both public and
private data, analysis tools and community engagement. These sites house genomic, …

Tool recommender system in Galaxy using deep learning

A Kumar, H Rasche, B Grüning, R Backofen - GigaScience, 2021 - academic.oup.com
Background Galaxy is a web-based and open-source scientific data-processing platform.
Researchers compose pipelines in Galaxy to analyse scientific data. These pipelines, also …