User profiles for Helena Rasche
Helena RascheOnderzoeker in Opleiding, Department Pathology, Erasmus Medical Center Verified email at erasmusmc.nl Cited by 4068 |
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update
Galaxy (homepage: https://galaxyproject.org , main public server: https://usegalaxy.org ) is a
web-based scientific analysis platform used by tens of thousands of scientists across the …
web-based scientific analysis platform used by tens of thousands of scientists across the …
[HTML][HTML] Galaxy and Apollo as a biologist-friendly interface for high-quality cooperative phage genome annotation
In the modern genomic era, scientists without extensive bioinformatic training need to apply
high-power computational analyses to critical tasks like phage genome annotation. At the …
high-power computational analyses to critical tasks like phage genome annotation. At the …
Galactic Circos: User-friendly Circos plots within the Galaxy platform
H Rasche, S Hiltemann - GigaScience, 2020 - academic.oup.com
Background Circos is a popular, highly flexible software package for the circular visualization
of complex datasets. While especially popular in the field of genomic analysis, Circos …
of complex datasets. While especially popular in the field of genomic analysis, Circos …
[HTML][HTML] Apollo: democratizing genome annotation
Genome annotation is the process of identifying the location and function of a genome's
encoded features. Improving the biological accuracy of annotation is a complex and iterative …
encoded features. Improving the biological accuracy of annotation is a complex and iterative …
[HTML][HTML] Galaxy Training: A powerful framework for teaching!
S Hiltemann, H Rasche, S Gladman… - PLoS computational …, 2023 - journals.plos.org
There is an ongoing explosion of scientific datasets being generated, brought on by recent
technological advances in many areas of the natural sciences. As a result, the life sciences …
technological advances in many areas of the natural sciences. As a result, the life sciences …
User-friendly, scalable tools and workflows for single-cell RNA-seq analysis
To the Editor—As single-cell RNA sequencing (scRNA-seq) becomes widespread, accessible
and scalable computational pipelines for data analysis are needed. We introduce an …
and scalable computational pipelines for data analysis are needed. We introduce an …
The Planemo toolkit for developing, deploying, and executing scientific data analyses in Galaxy and beyond
There are thousands of well-maintained high-quality open-source software utilities for all
aspects of scientific data analysis. For more than a decade, the Galaxy Project has been …
aspects of scientific data analysis. For more than a decade, the Galaxy Project has been …
[HTML][HTML] Fostering accessible online education using Galaxy as an e-learning platform
…, C Gallardo-Alba, A Erxleben, H Rasche… - PLoS computational …, 2021 - journals.plos.org
The COVID-19 pandemic is shifting teaching to an online setting all over the world. The Galaxy
framework facilitates the online learning process and makes it accessible by providing a …
framework facilitates the online learning process and makes it accessible by providing a …
Tripal v3: an ontology-based toolkit for construction of FAIR biological community databases
…, A Almsaeed, M Chen, A Bretaudeau, H Rasche… - Database, 2019 - academic.oup.com
Community biological databases provide an important online resource for both public and
private data, analysis tools and community engagement. These sites house genomic, …
private data, analysis tools and community engagement. These sites house genomic, …
Tool recommender system in Galaxy using deep learning
Background Galaxy is a web-based and open-source scientific data-processing platform.
Researchers compose pipelines in Galaxy to analyse scientific data. These pipelines, also …
Researchers compose pipelines in Galaxy to analyse scientific data. These pipelines, also …