MapMan is a user-driven tool that displays large genomics datasets onto diagrams of
metabolic pathways or other processes. Here, we present new developments, including …

Plants can assimilate inorganic nitrogen (N) sources to organic N such as amino acids. N is
the most important of the mineral nutrients required by plants and its metabolism is tightly …

Understanding cellular metabolic systems is vital not only for determining the function of
enzymatic genes, but also for elucidating the coordination among various metabolic pathways. …

pcaMethods is a Bioconductor compliant library for computing principal component analysis
(PCA) on incomplete data sets. The results can be analyzed directly or used to estimate …

Background Microarray technology has become a widely accepted and standardized tool in
biology. The first microarray data analysis programs were developed to support pair-wise …

To cope with oxidative stress, the metabolic network of plant cells must be reconfigured
either to bypass damaged enzymes or to support adaptive responses. To characterize the …

The Orthologous Matrix (OMA) project is a method and associated database inferring
evolutionary relationships amongst currently 1706 complete proteomes (ie the protein sequence …

Plant growth and development are tightly linked to primary metabolism and are subject to
natural variation. In order to obtain an insight into the genetic factors controlling biomass and …

The Orthologous Matrix (OMA) is a leading resource to relate genes across many species from
all of life. In this update paper, we review the recent algorithmic improvements in the OMA …

Background Metabolite profiling, the simultaneous quantification of multiple metabolites in
an experiment, is becoming increasingly popular, particularly with the rise of systems-level …