[HTML][HTML] Finished Genome of the Fungal Wheat Pathogen Mycosphaerella graminicola Reveals Dispensome Structure, Chromosome Plasticity, and Stealth …

…, P Dehal, P De Wit, B Donzelli, HC van de Geest… - PLoS …, 2011 - journals.plos.org
The plant-pathogenic fungus Mycosphaerella graminicola (asexual stage: Septoria tritici)
causes septoria tritici blotch, a disease that greatly reduces the yield and quality of wheat. This …

Exploring genetic variation in the tomato (Solanum section Lycopersicon) clade by whole‐genome sequencing

…, E Reclus, B de Geus, H van de Geest… - The Plant …, 2014 - Wiley Online Library
We explored genetic variation by sequencing a selection of 84 tomato accessions and
related wild species representative of the Lycopersicon, Arcanum, Eriopersicon and …

[HTML][HTML] High-quality de novo assembly of the apple genome and methylome dynamics of early fruit development

…, C Becker, N Choisne, E Schijlen, H Van de Geest… - Nature …, 2017 - nature.com
Using the latest sequencing and optical mapping technologies, we have produced a high-quality
de novo assembly of the apple (Malus domestica Borkh.) genome. Repeat sequences, …

Identification of microRNA targets in tomato fruit development using high-throughput sequencing and degradome analysis

…, C Maliepaard, H van de Geest… - Journal of …, 2013 - academic.oup.com
MicroRNAs (miRNAs) play important roles in plant development through regulation of gene
expression by mRNA degradation or translational inhibition. Despite the fact that tomato (…

[HTML][HTML] A high-quality genome sequence of Rosa chinensis to elucidate ornamental traits

…, N Daccord, L Leus, D Schulz, H Van de Geest… - Nature plants, 2018 - nature.com
Rose is the world’s most important ornamental plant, with economic, cultural and symbolic
value. Roses are cultivated worldwide and sold as garden roses, cut flowers and potted plants…

De Novo Assembly of a New Solanum pennellii Accession Using Nanopore Sequencing

…, AK Denton, B Istace, A Wormit, H van de Geest… - The Plant …, 2017 - academic.oup.com
Updates in nanopore technology have made it possible to obtain gigabases of sequence
data. Prior to this, nanopore sequencing technology was mainly used to analyze microbial …

An improved de novo assembly and annotation of the tomato reference genome using single-molecule sequencing, Hi-C proximity ligation and optical maps

PS Hosmani, M Flores-Gonzalez, H van de Geest… - biorxiv, 2019 - biorxiv.org
The original Heinz 1706 reference genome was produced by a large team of scientists from
across the globe from a variety of input sources that included 454 sequences in addition to …

Non-smoky glycosyltransferase1 prevents the release of smoky aroma from tomato fruit

…, CW Labrie, W Verkerke, H van de Geest… - The Plant …, 2013 - academic.oup.com
Phenylpropanoid volatiles are responsible for the key tomato fruit (Solanum lycopersicum)
aroma attribute termed “smoky.” Release of these volatiles from their glycosylated precursors, …

Genome-wide association mapping and genomic prediction elucidate the genetic architecture of morphological traits in Arabidopsis

…, R Bours, F Becker, A Kuhn, H van de Geest… - Plant …, 2016 - academic.oup.com
Quantitative traits in plants are controlled by a large number of genes and their interaction
with the environment. To disentangle the genetic architecture of such traits, natural variation …

[HTML][HTML] Tomato breeding in the genomics era: insights from a SNP array

M Víquez-Zamora, B Vosman, H van de Geest, A Bovy… - BMC genomics, 2013 - Springer
Background The major bottle neck in genetic and linkage studies in tomato has been the
lack of a sufficient number of molecular markers. This has radically changed with the …