Activities at the universal protein resource (UniProt)

…, T Wardell, X Watkins, H Zellner… - Nucleic acids …, 2014 - avesis.hacettepe.edu.tr
The mission of the Universal Protein Resource (UniProt) (http://www.uniprot.org) is to provide
the scientific community with a comprehensive, high-quality and freely accessible resource …

UniRule: a unified rule resource for automatic annotation in the UniProt Knowledgebase

…, V Volynkin, R Saidi, D Poggioli, H Zellner… - …, 2020 - academic.oup.com
Motivation The number of protein records in the UniProt Knowledgebase (UniProtKB: https://www.uniprot.org
) continues to grow rapidly as a result of genome sequencing and the …

CROssBAR: comprehensive resource of biomedical relations with knowledge graph representations

…, R Saidi, V Volynkin, H Zellner… - Nucleic acids …, 2021 - academic.oup.com
Systemic analysis of available large-scale biological/biomedical data is critical for studying
biological mechanisms, and developing novel and effective treatment approaches against …

Prescont: Predicting protein‐protein interfaces utilizing four residue properties

H Zellner, M Staudigel, T Trenner… - Proteins: Structure …, 2012 - Wiley Online Library
An important task of computational biology is to identify those parts of a polypeptide chain,
which are involved in interactions with other proteins. For this purpose, we have developed …

Analysis of the tryptic search space in UniProt databases

…, AWS da Silva, B Bely, R Antunes, H Zellner… - …, 2015 - Wiley Online Library
In this article, we provide a comprehensive study of the content of the Universal Protein
Resource (UniProt) protein data sets for human and mouse. The tryptic search spaces of the …

Dimerization determines substrate specificity of a bacterial prenyltransferase

D Peterhoff, H Zellner, H Guldan, R Merkl… - …, 2012 - Wiley Online Library
We have identified the native dimer interface of heptaprenylglyceryl phosphate synthase PcrB
from the bacterium Bacillus subtilis and analyzed the significance of oligomer formation for …

CROssBAR: comprehensive resource of biomedical relations with deep learning applications and knowledge graph representations

…, E Nalbat, A Nightingale, R Saidi, V Volynkin, H Zellner… - bioRxiv, 2020 - biorxiv.org
Systemic analysis of available large-scale biological and biomedical data is critical for
developing novel and effective treatment approaches against both complex and infectious …

[PDF][PDF] Hippo-released WWC1 facilitates AMPA receptor regulatory complexes for hippocampal learning

…, S Martinelli, AS Häusl, ML Pöhlmann, A Hermann… - Cell Reports, 2022 - cell.com
Learning and memory rely on changes in postsynaptic glutamergic α-amino-3-hydroxy-5-methyl-4-isoxazolepropionic
acid (AMPA)-type receptor (AMPAR) number, spatial organization, …

CROssBAR: comprehensive resource of biomedical relations with network representations and deep learning

…, T Doğan, R Atalay, MJ Martin, R Saidi, H Zellner… - 2019 - open.metu.edu.tr
Biomedical information is scattered across different biological data resources, which are
biologically related but only loosely linked to each other in terms of data connections. This …

[PDF][PDF] Monitoring the environmental impact of Bt maize: a research project of the Bavarian State Ministry for Health, Environment and Consumer Protection, and the …

…, R Beck, U Benker, A Hermann, D Mautz, M Zellner… - 2006 - cabidigitallibrary.org
The Bavarian State Ministry for Health, Environment and Consumer Protection has launched
the research program "Monitoring the environmental effects of transgenic plants" running …