Selective nanopore sequencing of human BRCA1 by Cas9-assisted targeting of chromosome segments (CATCH)
T Gabrieli, H Sharim, D Fridman, N Arbib… - Nucleic acids …, 2018 - academic.oup.com
Next generation sequencing (NGS) is challenged by structural and copy number variations
larger than the typical read length of several hundred bases. Third-generation sequencing …
larger than the typical read length of several hundred bases. Third-generation sequencing …
[HTML][HTML] Multi-clonal SARS-CoV-2 neutralization by antibodies isolated from severe COVID-19 convalescent donors
…, N Ben-Shalom, M Navon, D Rafael, H Sharim… - PLoS …, 2021 - journals.plos.org
The interactions between antibodies, SARS-CoV-2 and immune cells contribute to the
pathogenesis of COVID-19 and protective immunity. To understand the differences between …
pathogenesis of COVID-19 and protective immunity. To understand the differences between …
Lighting up individual DNA damage sites by in vitro repair synthesis
S Zirkin, S Fishman, H Sharim, Y Michaeli… - Journal of the …, 2014 - ACS Publications
DNA damage and repair are linked to fundamental biological processes such as metabolism,
disease, and aging. Single-strand lesions are the most abundant form of DNA damage; …
disease, and aging. Single-strand lesions are the most abundant form of DNA damage; …
Long-read single-molecule maps of the functional methylome
H Sharim, A Grunwald, T Gabrieli, Y Michaeli… - Genome …, 2019 - genome.cshlp.org
We report on the development of a methylation analysis workflow for optical detection of
fluorescent methylation profiles along chromosomal DNA molecules. In combination with …
fluorescent methylation profiles along chromosomal DNA molecules. In combination with …
Epigenetic optical mapping of 5-hydroxymethylcytosine in nanochannel arrays
The epigenetic mark 5-hydroxymethylcytosine (5-hmC) is a distinct product of active DNA
demethylation that is linked to gene regulation, development, and disease. In particular, 5-hmC …
demethylation that is linked to gene regulation, development, and disease. In particular, 5-hmC …
[PDF][PDF] From single-molecule to genome-wide mapping of DNA lesions: repair-assisted damage detection sequencing
N Gilat, D Fridman, H Sharim, S Margalit… - Biophysical reports, 2021 - cell.com
Mapping DNA damage and its repair has immense potential in understanding environmental
exposures, their genotoxicity, and their impact on human health. Monitoring changes in …
exposures, their genotoxicity, and their impact on human health. Monitoring changes in …
Rapid quantification of oxidation and UV induced DNA damage by repair assisted damage detection-(rapid RADD)
…, S Margalit, Y Michaeli, S Avraham, H Sharim… - Analytical …, 2020 - ACS Publications
Knowing the amount and type of DNA damage is of great significance for a broad range of
clinical and research applications. However, existing methods are either lacking in their ability …
clinical and research applications. However, existing methods are either lacking in their ability …
Cas9-Assisted Targeting of CHromosome segments (CATCH) for targeted nanopore sequencing and optical genome mapping
T Gabrieli, H Sharim, Y Michaeli, Y Ebenstein - BioRxiv, 2017 - biorxiv.org
Variations in the genetic code, from single point mutations to large structural or copy number
alterations, influence susceptibility, onset, and progression of genetic diseases and tumor …
alterations, influence susceptibility, onset, and progression of genetic diseases and tumor …
Microfluidic DNA combing for parallel single-molecule analysis
DNA combing is a widely used method for stretching and immobilising DNA molecules on a
surface. Fluorescent labelling of genomic information enables high-resolution optical …
surface. Fluorescent labelling of genomic information enables high-resolution optical …
Long reads capture simultaneous enhancer–promoter methylation status for cell-type deconvolution
S Margalit, Y Abramson, H Sharim, Z Manber… - …, 2021 - academic.oup.com
Motivation While promoter methylation is associated with reinforcing fundamental tissue
identities, the methylation status of distant enhancers was shown by genome-wide association …
identities, the methylation status of distant enhancers was shown by genome-wide association …