Epigenetic programming of monocyte-to-macrophage differentiation and trained innate immunity

S Saeed, J Quintin, HHD Kerstens, NA Rao… - science, 2014 - science.org
Introduction Monocytes circulate in the bloodstream for up to 3 to 5 days. Concomitantly,
immunological imprinting of either tolerance (immunosuppression) or trained immunity (innate …

[PDF][PDF] Whole-genome bisulfite sequencing of two distinct interconvertible DNA methylomes of mouse embryonic stem cells

…, AB Brinkman, J Arand, LI Kroeze, HHD Kerstens… - Cell stem cell, 2013 - cell.com
The use of two kinase inhibitors (2i) enables derivation of mouse embryonic stem cells (ESCs)
in the pluripotent ground state. Using whole-genome bisulfite sequencing (WGBS), we …

Transcriptional diversity during lineage commitment of human blood progenitors

…, R Guigo, D Hampshire, AM Kelly, HHD Kerstens… - Science, 2014 - science.org
Introduction Blood production in humans culminates in the daily release of around 10 11
cells into the circulation, mainly platelets and red blood cells. All blood cells originate from a …

[HTML][HTML] An organoid biobank for childhood kidney cancers that captures disease and tissue heterogeneity

…, L Custers, H Begthel, HHD Kerstens… - Nature …, 2020 - nature.com
Kidney tumours are among the most common solid tumours in children, comprising distinct
subtypes differing in many aspects, including cell-of-origin, genetics, and pathology. Pre-…

[HTML][HTML] Dynamics of gene silencing during X inactivation using allele-specific RNA-seq

H Marks, HHD Kerstens, TS Barakat, E Splinter… - Genome biology, 2015 - Springer
Background During early embryonic development, one of the two X chromosomes in mammalian
female cells is inactivated to compensate for a potential imbalance in transcript levels …

SMIM1 underlies the Vel blood group and influences red blood cell traits

…, VG Haver, G Jordan, J Karjalainen, HHD Kerstens… - Nature …, 2013 - nature.com
The blood group Vel was discovered 60 years ago 1 , but the underlying gene is unknown.
Individuals negative for the Vel antigen are rare and are required for the safe transfusion of …

[HTML][HTML] Genome wide SNP discovery, analysis and evaluation in mallard (Anas platyrhynchos)

RHS Kraus, HHD Kerstens, P Van Hooft… - Bmc Genomics, 2011 - Springer
Background Next generation sequencing technologies allow to obtain at low cost the
genomic sequence information that currently lacks for most economically and ecologically …

[HTML][HTML] Large scale single nucleotide polymorphism discovery in unsequenced genomes using second generation high throughput sequencing technology: applied …

HHD Kerstens, RPMA Crooijmans, A Veenendaal… - BMC genomics, 2009 - Springer
Background The development of second generation sequencing methods has enabled large
scale DNA variation studies at moderate cost. For the high throughput discovery of single …

[HTML][HTML] Comparison of linkage disequilibrium and haplotype diversity on macro-and microchromosomes in chicken

…, RPMA Crooijmans, JWM Bastiaansen, HHD Kerstens… - BMC genetics, 2009 - Springer
Background The chicken (Gallus gallus), like most avian species, has a very distinct
karyotype consisting of many micro- and a few macrochromosomes. While it is known that …

Genome‐wide SNP detection in the great tit Parus major using high throughput sequencing

NEMVAN BERS, K Oers, HHD Kerstens… - Molecular …, 2010 - Wiley Online Library
Identifying genes that underlie ecological traits will open exiting possibilities to study gene–environment
interactions in shaping phenotypes and in measuring natural selection on genes…