QTL‐seq: rapid mapping of quantitative trait loci in rice by whole genome resequencing of DNA from two bulked populations

…, C Mitsuoka, A Uemura, H Utsushi… - The Plant …, 2013 - Wiley Online Library
The majority of agronomically important crop traits are quantitative, meaning that they are
controlled by multiple genes each with a small effect (quantitative trait loci, QTL s). Mapping …

MutMap accelerates breeding of a salt-tolerant rice cultivar

…, H Yaegashi, T Obara, K Oikawa, H Utsushi… - Nature …, 2015 - nature.com
OsRR22 encodes a 696-amino-acid B-type response regulator protein with a predicted N-terminal
receiver domain and a C-terminal Myb-like DNA-binding domain, which probably …

[HTML][HTML] MutMap+: genetic mapping and mutant identification without crossing in rice

…, H Matsumura, H Saitoh, C Mitsuoka, H Utsushi… - PloS one, 2013 - journals.plos.org
Advances in genome sequencing technologies have enabled researchers and breeders to
rapidly associate phenotypic variation to genome sequence differences. We recently took …

MutMap‐Gap: whole‐genome resequencing of mutant F2 progeny bulk combined with de novo assembly of gap regions identifies the rice blast resistance gene Pii

…, M Tamiru, A Abe, C Mitsuoka, H Utsushi… - New …, 2013 - Wiley Online Library
Next‐generation sequencing allows the identification of mutations responsible for mutant
phenotypes by whole‐genome resequencing and alignment to a reference genome. However, …

Rice Exo70 interacts with a fungal effector, AVR‐Pii, and is required for AVR‐Pii‐triggered immunity

…, K Yoshida, H Kanzaki, E Kanzaki, H Utsushi… - The Plant …, 2015 - Wiley Online Library
Vesicle trafficking including the exocytosis pathway is intimately associated with host immunity
against pathogens. However, we still have insufficient knowledge about how it contributes …

[HTML][HTML] Discovery of nucleotide polymorphisms in the Musa gene pool by Ecotilling

…, L Sági, OA Huynh, H Utsushi… - Theoretical and applied …, 2010 - Springer
Musa (banana and plantain) is an important genus for the global export market and in local
markets where it provides staple food for approximately 400 million people. Hybridization …

An unconventional NOI/RIN4 domain of a rice NLR protein binds host EXO70 protein to confer fungal immunity

K Fujisaki, Y Abe, E Kanzaki, K Ito, H Utsushi, H Saitoh… - BioRxiv, 2017 - biorxiv.org
A subset of plant nucleotide-binding domain and leucine-rich repeat-containing (NLR)
proteins carry extraneous integrated domains that have been proposed to mediate pathogen …

The tillering phenotype of the rice plastid terminal oxidase (PTOX) loss‐of‐function mutant is associated with strigolactone deficiency

M Tamiru, A Abe, H Utsushi, K Yoshida… - New …, 2014 - Wiley Online Library
The significance of plastid terminal oxidase ( PTOX ) in phytoene desaturation and
chloroplast function has been demonstrated using PTOX ‐deficient mutants, particularly in …

[HTML][HTML] Rice apoplastic CBM1-interacting protein counters blast pathogen invasion by binding conserved carbohydrate binding module 1 motif of fungal proteins

…, H Saitoh, K Fujisaki, K Ishikawa, H Utsushi… - PLoS …, 2022 - journals.plos.org
When infecting plants, fungal pathogens secrete cell wall-degrading enzymes (CWDEs) that
break down cellulose and hemicellulose, the primary components of plant cell walls. Some …

Sat-BSA: an NGS-based method using local de novo assembly of long reads for rapid identification of genomic structural variations associated with agronomic traits

…, N Itoh, M Asukai, A Uemura, K Oikawa, H Utsushi… - Breeding …, 2021 - jstage.jst.go.jp
Advances in next generation sequencing (NGS)-based methodologies have accelerated
the identifications of simple genetic variants such as point mutations and small insertions/…