Exploiting indirect neighbours and topological weight to predict protein function from protein–protein interactions
Motivation: Most approaches in predicting protein function from protein–protein interaction
data utilize the observation that a protein often share functions with proteins that interacts with …
data utilize the observation that a protein often share functions with proteins that interacts with …
Complex discovery from weighted PPI networks
Motivation: Protein complexes are important for understanding principles of cellular organization
and function. High-throughput experimental techniques have produced a large amount …
and function. High-throughput experimental techniques have produced a large amount …
Systematic exploration of synergistic drug pairs
Drug synergy allows a therapeutic effect to be achieved with lower doses of component
drugs. Drug synergy can result when drugs target the products of genes that act in parallel …
drugs. Drug synergy can result when drugs target the products of genes that act in parallel …
Using indirect protein–protein interactions for protein complex prediction
Protein complexes are fundamental for understanding principles of cellular organizations.
As the sizes of protein–protein interaction (PPI) networks are increasing, accurate and fast …
As the sizes of protein–protein interaction (PPI) networks are increasing, accurate and fast …
[HTML][HTML] Ensemble positive unlabeled learning for disease gene identification
An increasing number of genes have been experimentally confirmed in recent years as
causative genes to various human diseases. The newly available knowledge can be exploited …
causative genes to various human diseases. The newly available knowledge can be exploited …
[HTML][HTML] Genome analysis reveals interplay between 5′ UTR introns and nuclear mRNA export for secretory and mitochondrial genes
In higher eukaryotes, messenger RNAs (mRNAs) are exported from the nucleus to the
cytoplasm via factors deposited near the 5′ end of the transcript during splicing. The signal …
cytoplasm via factors deposited near the 5′ end of the transcript during splicing. The signal …
[HTML][HTML] Whole blood gene expression profile associated with spontaneous preterm birth in women with threatened preterm labor
Threatened preterm labor (TPTL) is defined as persistent premature uterine contractions
between 20 and 37 weeks of gestation and is the most common condition that requires …
between 20 and 37 weeks of gestation and is the most common condition that requires …
An efficient strategy for extensive integration of diverse biological data for protein function prediction
Motivation: With the increasing availability of diverse biological information, protein function
prediction approaches have converged towards integration of heterogeneous data. Many …
prediction approaches have converged towards integration of heterogeneous data. Many …
Increasing the reliability of protein interactomes
Protein interactions are crucial components of all cellular processes. An in-depth knowledge
of the full complement of protein interactions in a cell, therefore, provides insight into the …
of the full complement of protein interactions in a cell, therefore, provides insight into the …
[HTML][HTML] Using indirect protein interactions for the prediction of Gene Ontology functions
Background Protein-protein interaction has been used to complement traditional sequence
homology to elucidate protein function. Most existing approaches only make use of direct …
homology to elucidate protein function. Most existing approaches only make use of direct …