Exploiting indirect neighbours and topological weight to predict protein function from protein–protein interactions

HN Chua, WK Sung, L Wong - Bioinformatics, 2006 - academic.oup.com
Motivation: Most approaches in predicting protein function from protein–protein interaction
data utilize the observation that a protein often share functions with proteins that interacts with …

Complex discovery from weighted PPI networks

G Liu, L Wong, HN Chua - Bioinformatics, 2009 - academic.oup.com
Motivation: Protein complexes are important for understanding principles of cellular organization
and function. High-throughput experimental techniques have produced a large amount …

Systematic exploration of synergistic drug pairs

M Cokol, HN Chua, M Tasan, B Mutlu… - Molecular systems …, 2011 - embopress.org
Drug synergy allows a therapeutic effect to be achieved with lower doses of component
drugs. Drug synergy can result when drugs target the products of genes that act in parallel …

Using indirect protein–protein interactions for protein complex prediction

HN Chua, K Ning, WK Sung, HW Leong… - … of bioinformatics and …, 2008 - World Scientific
Protein complexes are fundamental for understanding principles of cellular organizations.
As the sizes of protein–protein interaction (PPI) networks are increasing, accurate and fast …

[HTML][HTML] Ensemble positive unlabeled learning for disease gene identification

P Yang, X Li, HN Chua, CK Kwoh, SK Ng - PloS one, 2014 - journals.plos.org
An increasing number of genes have been experimentally confirmed in recent years as
causative genes to various human diseases. The newly available knowledge can be exploited …

[HTML][HTML] Genome analysis reveals interplay between 5′ UTR introns and nuclear mRNA export for secretory and mitochondrial genes

C Cenik, HN Chua, H Zhang, SP Tarnawsky… - PLoS …, 2011 - journals.plos.org
In higher eukaryotes, messenger RNAs (mRNAs) are exported from the nucleus to the
cytoplasm via factors deposited near the 5′ end of the transcript during splicing. The signal …

[HTML][HTML] Whole blood gene expression profile associated with spontaneous preterm birth in women with threatened preterm labor

YJ Heng, CE Pennell, HN Chua, JE Perkins, SJ Lye - PLoS One, 2014 - journals.plos.org
Threatened preterm labor (TPTL) is defined as persistent premature uterine contractions
between 20 and 37 weeks of gestation and is the most common condition that requires …

An efficient strategy for extensive integration of diverse biological data for protein function prediction

HN Chua, WK Sung, L Wong - Bioinformatics, 2007 - academic.oup.com
Motivation: With the increasing availability of diverse biological information, protein function
prediction approaches have converged towards integration of heterogeneous data. Many …

Increasing the reliability of protein interactomes

HN Chua, L Wong - Drug discovery today, 2008 - Elsevier
Protein interactions are crucial components of all cellular processes. An in-depth knowledge
of the full complement of protein interactions in a cell, therefore, provides insight into the …

[HTML][HTML] Using indirect protein interactions for the prediction of Gene Ontology functions

HN Chua, WK Sung, L Wong - BMC bioinformatics, 2007 - Springer
Background Protein-protein interaction has been used to complement traditional sequence
homology to elucidate protein function. Most existing approaches only make use of direct …