User profiles for Hsuan-lin Her
Hsuan-lin HerGraduate Student at UC San Diego Verified email at ucsd.edu Cited by 224 |
[PDF][PDF] Proteomic discovery of chemical probes that perturb protein complexes in human cells
Most human proteins lack chemical probes, and several large-scale and generalizable small-molecule
binding assays have been introduced to address this problem. How compounds …
binding assays have been introduced to address this problem. How compounds …
Remodeling oncogenic transcriptomes by small molecules targeting NONO
SG Kathman, SJ Koo, GL Lindsey, HL Her… - Nature chemical …, 2023 - nature.com
Much of the human proteome is involved in mRNA homeostasis, but most RNA-binding
proteins lack chemical probes. Here we identify electrophilic small molecules that rapidly and …
proteins lack chemical probes. Here we identify electrophilic small molecules that rapidly and …
A pan-genome-based machine learning approach for predicting antimicrobial resistance activities of the Escherichia coli strains
Motivation Antimicrobial resistance (AMR) is becoming a huge problem in both developed
and developing countries, and identifying strains resistant or susceptible to certain antibiotics …
and developing countries, and identifying strains resistant or susceptible to certain antibiotics …
[HTML][HTML] Multiplexed transcriptome discovery of RNA-binding protein binding sites by antibody-barcode eCLIP
… RBPs are color-coded with their annotated binding feature. Rows are labeled by their respective
… To determine the top targets for SLBP we first ranked all peaks by their P value and then …
… To determine the top targets for SLBP we first ranked all peaks by their P value and then …
[PDF][PDF] Skipper analysis of eCLIP datasets enables sensitive detection of constrained translation factor binding sites
Technology for crosslinking and immunoprecipitation (CLIP) followed by sequencing (CLIP-seq)
has identified the transcriptomic targets of hundreds of RNA-binding proteins in cells. To …
has identified the transcriptomic targets of hundreds of RNA-binding proteins in cells. To …
[HTML][HTML] Inferring a spatial code of cell-cell interactions across a whole animal body
…, I Shamie, J Chan, HL Her… - PLoS computational …, 2022 - journals.plos.org
Cell-cell interactions shape cellular function and ultimately organismal phenotype.
Interacting cells can sense their mutual distance using combinations of ligand-receptor pairs, …
Interacting cells can sense their mutual distance using combinations of ligand-receptor pairs, …
[HTML][HTML] Large-scale evaluation of the ability of RNA-binding proteins to activate exon inclusion
RNA-binding proteins (RBPs) modulate alternative splicing outcomes to determine isoform
expression and cellular survival. To identify RBPs that directly drive alternative exon inclusion…
expression and cellular survival. To identify RBPs that directly drive alternative exon inclusion…
[HTML][HTML] PangenomeNet: a pan-genome-based network reveals functional modules on antimicrobial resistome for Escherichia coli strains
Background Discerning genes crucial to antimicrobial resistance (AMR) mechanisms is
becoming more and more important to accurately and swiftly identify AMR pathogenic strains. …
becoming more and more important to accurately and swiftly identify AMR pathogenic strains. …
Using time-frequency features to recognize abnormal heart sounds
Disease of the heart accounts for 6% of all death. Heart sound is a routine in physical examination
clinically, and is sensitive in detecting a subset of heart diseases. In the current study, …
clinically, and is sensitive in detecting a subset of heart diseases. In the current study, …
Metadensity: a background-aware python pipeline for summarizing CLIP signals on various transcriptomic sites
Motivation Cross-linking and immunoprecipitation (CLIP) is a technology to map the binding
sites of RNA-binding proteins (RBPs). The region where an RBP binds within RNA is often …
sites of RNA-binding proteins (RBPs). The region where an RBP binds within RNA is often …