User profiles for Huw Ogilvie

Huw Alexander Ogilvie

MD Anderson Cancer Center
Verified email at mdanderson.org
Cited by 4389

[HTML][HTML] BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis

…, FK Mendes, NF Müller, HA Ogilvie… - PLoS computational …, 2019 - journals.plos.org
Elaboration of Bayesian phylogenetic inference methods has continued at pace in recent
years with major new advances in nearly all aspects of the joint modelling of evolutionary data. …

StarBEAST2 brings faster species tree inference and accurate estimates of substitution rates

HA Ogilvie, RR Bouckaert… - Molecular biology and …, 2017 - academic.oup.com
Fully Bayesian multispecies coalescent (MSC) methods like *BEAST estimate species trees
from multiple sequence alignments. Today thousands of genes can be sequenced for a …

The peptide-encoding CEP1 gene modulates lateral root and nodule numbers in Medicago truncatula

N Imin, NA Mohd-Radzman, HA Ogilvie… - Journal of …, 2013 - academic.oup.com
The role of MtCEP1, a member of the CEP (C-terminally encoded peptide) signaling peptide
family, was examined in Medicago truncatula root development. MtCEP1 was expressed in …

Bayesian inference of species networks from multilocus sequence data

C Zhang, HA Ogilvie, AJ Drummond… - Molecular biology and …, 2018 - academic.oup.com
Reticulate species evolution, such as hybridization or introgression, is relatively common in
nature. In the presence of reticulation, species relationships can be captured by a rooted …

Computational performance and statistical accuracy of* BEAST and comparisons with other methods

HA Ogilvie, J Heled, D Xie, AJ Drummond - Systematic biology, 2016 - academic.oup.com
Under the multispecies coalescent model of molecular evolution, gene trees have
independent evolutionary histories within a shared species tree. In comparison, supermatrix …

Fungal phytopathogens encode functional homologues of plant rapid alkalinization factor (RALF) peptides

…, IML Saur, J Simbaqueba, HA Ogilvie… - Molecular plant …, 2017 - Wiley Online Library
In this article, we describe the presence of genes encoding close homologues of an endogenous
plant peptide, rapid alkalinization factor (RALF), within the genomes of 26 species of …

Complexity of avian evolution revealed by family-level genomes

…, C Zhou, Y Xie, Z Huang, Z Cao, Z Yan, HA Ogilvie… - Nature, 2024 - nature.com
Despite tremendous efforts in the past decades, relationships among main avian lineages
remain heavily debated without a clear resolution. Discrepancies have been attributed to …

Advances in computational methods for phylogenetic networks in the presence of hybridization

RAL Elworth, HA Ogilvie, J Zhu, L Nakhleh - … and phylogenetics: seminal …, 2019 - Springer
Phylogenetic networks extend phylogenetic trees to allow for modeling reticulate evolutionary
processes such as hybridization. They take the shape of a rooted, directed, acyclic graph, …

[HTML][HTML] Diversification of the C-TERMINALLY ENCODED PEPTIDE (CEP) gene family in angiosperms, and evolution of plant-family specific CEP genes

HA Ogilvie, N Imin, MA Djordjevic - BMC genomics, 2014 - Springer
Background Small, secreted signaling peptides work in parallel with phytohormones to
control important aspects of plant growth and development. Genes from the C-TERMINALLY …

CEP–CEPR1 signalling inhibits the sucrose-dependent enhancement of lateral root growth

K Chapman, M Taleski, HA Ogilvie… - Journal of …, 2019 - academic.oup.com
Lateral root (LR) proliferation is a major determinant of soil nutrient uptake. How resource
allocation controls the extent of LR growth remains unresolved. We used genetic, physiological…