User profiles for Ian A. Swinburne
Ian SwinburneUC Berkeley Verified email at berkeley.edu Cited by 1891 |
Observing the cell in its native state: Imaging subcellular dynamics in multicellular organisms
INTRODUCTION Organisms live by means of the complex, dynamic, three-dimensional (3D)
interplay between millions of components, from the molecular to the multicellular. …
interplay between millions of components, from the molecular to the multicellular. …
[HTML][HTML] Specified neural progenitors sort to form sharp domains after noisy Shh signaling
…, KR Mosaliganti, L Souhait, N Rannou, IA Swinburne… - Cell, 2013 - cell.com
Sharply delineated domains of cell types arise in developing tissues under instruction of
inductive signal (morphogen) gradients, which specify distinct cell fates at different signal levels. …
inductive signal (morphogen) gradients, which specify distinct cell fates at different signal levels. …
[PDF][PDF] Interplay of cell shape and division orientation promotes robust morphogenesis of developing epithelia
…, N Rannou, A Gelas, L Souhait, IA Swinburne… - Cell, 2014 - cell.com
Epithelial cells acquire functionally important shapes (eg, squamous, cuboidal, columnar)
during development. Here, we combine theory, quantitative imaging, and perturbations to …
during development. Here, we combine theory, quantitative imaging, and perturbations to …
[HTML][HTML] ACME: Automated Cell Morphology Extractor for Comprehensive Reconstruction of Cell Membranes
The quantification of cell shape, cell migration, and cell rearrangements is important for
addressing classical questions in developmental biology such as patterning and tissue …
addressing classical questions in developmental biology such as patterning and tissue …
Intron length increases oscillatory periods of gene expression in animal cells
Introns may affect gene expression by increasing the time required to transcribe the gene.
One way for extended transcription times to affect the behavior of a gene expression program …
One way for extended transcription times to affect the behavior of a gene expression program …
[PDF][PDF] Intron delays and transcriptional timing during development
IA Swinburne, PA Silver - Developmental cell, 2008 - cell.com
The time taken to transcribe most metazoan genes is significant because of the substantial
length of introns. Developmentally regulated gene networks, where timing and dynamic …
length of introns. Developmentally regulated gene networks, where timing and dynamic …
Rapid positional cloning of zebrafish mutations by linkage and homozygosity mapping using whole-genome sequencing
N Obholzer, IA Swinburne, E Schwab… - …, 2012 - journals.biologists.com
Forward genetic screens in zebrafish have identified >9000 mutants, many of which are potential
disease models. Most mutants remain molecularly uncharacterized because of the high …
disease models. Most mutants remain molecularly uncharacterized because of the high …
[HTML][HTML] Improved long-term imaging of embryos with genetically encoded α-bungarotoxin
Rapid advances in microscopy and genetic labeling strategies have created new opportunities
for time-lapse imaging of embryonic development. However, methods for immobilizing …
for time-lapse imaging of embryonic development. However, methods for immobilizing …
Size control of the inner ear via hydraulic feedback
10.7554/eLife.39596.001 Animals make organs of precise size, shape, and symmetry but
how developing embryos do this is largely unknown. Here, we combine quantitative imaging, …
how developing embryos do this is largely unknown. Here, we combine quantitative imaging, …
[HTML][HTML] Genomic mapping of RNA polymerase II reveals sites of co-transcriptional regulation in human cells
Background Transcription by RNA polymerase II is regulated at many steps including
initiation, promoter release, elongation and termination. Accumulation of RNA polymerase II at …
initiation, promoter release, elongation and termination. Accumulation of RNA polymerase II at …