User profiles for Ian A. Swinburne

Ian Swinburne

UC Berkeley
Verified email at berkeley.edu
Cited by 1891

Observing the cell in its native state: Imaging subcellular dynamics in multicellular organisms

…, DE Milkie, V Singh, K Wang, IA Swinburne… - Science, 2018 - science.org
INTRODUCTION Organisms live by means of the complex, dynamic, three-dimensional (3D)
interplay between millions of components, from the molecular to the multicellular. …

[HTML][HTML] Specified neural progenitors sort to form sharp domains after noisy Shh signaling

…, KR Mosaliganti, L Souhait, N Rannou, IA Swinburne… - Cell, 2013 - cell.com
Sharply delineated domains of cell types arise in developing tissues under instruction of
inductive signal (morphogen) gradients, which specify distinct cell fates at different signal levels. …

[PDF][PDF] Interplay of cell shape and division orientation promotes robust morphogenesis of developing epithelia

…, N Rannou, A Gelas, L Souhait, IA Swinburne… - Cell, 2014 - cell.com
Epithelial cells acquire functionally important shapes (eg, squamous, cuboidal, columnar)
during development. Here, we combine theory, quantitative imaging, and perturbations to …

[HTML][HTML] ACME: Automated Cell Morphology Extractor for Comprehensive Reconstruction of Cell Membranes

…, RR Noche, F Xiong, IA Swinburne… - PLoS computational …, 2012 - journals.plos.org
The quantification of cell shape, cell migration, and cell rearrangements is important for
addressing classical questions in developmental biology such as patterning and tissue …

Intron length increases oscillatory periods of gene expression in animal cells

IA Swinburne, DG Miguez, D Landgraf… - Genes & …, 2008 - genesdev.cshlp.org
Introns may affect gene expression by increasing the time required to transcribe the gene.
One way for extended transcription times to affect the behavior of a gene expression program …

[PDF][PDF] Intron delays and transcriptional timing during development

IA Swinburne, PA Silver - Developmental cell, 2008 - cell.com
The time taken to transcribe most metazoan genes is significant because of the substantial
length of introns. Developmentally regulated gene networks, where timing and dynamic …

Rapid positional cloning of zebrafish mutations by linkage and homozygosity mapping using whole-genome sequencing

N Obholzer, IA Swinburne, E Schwab… - …, 2012 - journals.biologists.com
Forward genetic screens in zebrafish have identified >9000 mutants, many of which are potential
disease models. Most mutants remain molecularly uncharacterized because of the high …

[HTML][HTML] Improved long-term imaging of embryos with genetically encoded α-bungarotoxin

IA Swinburne, KR Mosaliganti, AA Green… - PloS one, 2015 - journals.plos.org
Rapid advances in microscopy and genetic labeling strategies have created new opportunities
for time-lapse imaging of embryonic development. However, methods for immobilizing …

Size control of the inner ear via hydraulic feedback

KR Mosaliganti, IA Swinburne, CU Chan, ND Obholzer… - Elife, 2019 - elifesciences.org
10.7554/eLife.39596.001 Animals make organs of precise size, shape, and symmetry but
how developing embryos do this is largely unknown. Here, we combine quantitative imaging, …

[HTML][HTML] Genomic mapping of RNA polymerase II reveals sites of co-transcriptional regulation in human cells

AS Brodsky, CA Meyer, IA Swinburne, G Hall… - Genome biology, 2005 - Springer
Background Transcription by RNA polymerase II is regulated at many steps including
initiation, promoter release, elongation and termination. Accumulation of RNA polymerase II at …