Pathogenic variants in CRX have distinct cis-regulatory effects on enhancers and silencers in photoreceptors

…, RZ Friedman, Y Zheng, C Sun, IY Oh… - Genome …, 2024 - genome.cshlp.org
Dozens of variants in the gene for the homeodomain transcription factor (TF) cone-rod
homeobox (CRX) are linked with human blinding diseases that vary in their severity and age of …

[HTML][HTML] The molecular revolution in cutaneous biology: EDC and locus control

IY Oh, C de Guzman Strong - Journal of Investigative Dermatology, 2017 - Elsevier
The epidermal differentiation complex (EDC) locus consists of a cluster of genes important
for the terminal differentiation of the epidermis. While early studies identified the functional …

[HTML][HTML] Regulation of the dynamic chromatin architecture of the epidermal differentiation complex is mediated by a c-Jun/AP-1-modulated enhancer

IY Oh, DM Albea, ZA Goodwin, AM Quiggle… - Journal of Investigative …, 2014 - Elsevier
The epidermal differentiation complex (EDC) locus comprises a syntenic and linear cluster
of genes whose concomitant expression is a hallmark feature of differentiation in the …

[HTML][HTML] Selective sweep for an enhancer involucrin allele identifies skin barrier adaptation out of Africa

…, EA Brettmann, AD Schmidt, ZA Goodwin, IY Oh… - Nature …, 2021 - nature.com
The genetic modules that contribute to human evolution are poorly understood. Here we
investigate positive selection in the Epidermal Differentiation Complex locus for skin barrier …

Leveraging GPT-4 for Identifying Cancer Phenotypes in Electronic Health Records: A Performance Comparison between GPT-4, GPT-3.5-turbo, Flan-T5 and spaCy's …

K Bhattarai, IY Oh, JM Sierra, J Tang, PRO Payne… - bioRxiv, 2023 - biorxiv.org
Objective Accurately identifying clinical phenotypes from Electronic Health Records (EHRs)
provides additional insights into patients’ health, especially when such information is …

Machine Learning for Benchmarking Adolescent Idiopathic Scoliosis Surgery Outcomes

A Gupta, IY Oh, S Kim, MC Marks, PRO Payne… - Spine, 2023 - journals.lww.com
Study Design. Retrospective cohort. Objective. The aim of this study was to design a risk-stratified
benchmarking tool for adolescent idiopathic scoliosis (AIS) surgeries. Summary of …

High-throughput identification of gene regulatory sequences using next-generation sequencing of circular chromosome conformation capture (4C-seq)

EA Brettmann, IY Oh, C de Guzman Strong - JoVE (Journal of Visualized …, 2018 - jove.com
The identification of regulatory elements for a given target gene poses a significant technical
challenge owing to the variability in the positioning and effect sizes of regulatory elements …

High-Throughput Analysis of Retinal Cis-Regulatory Networks by Massively Parallel Reporter Assays

IY Oh, S Chen - Retinal Degenerative Diseases: Mechanisms and …, 2019 - Springer
Inherited retinal degenerations are diverse and debilitating blinding diseases. Genetic tests
and exome sequencing have identified mutations in many protein-coding genes associated …

Extraction of clinical phenotypes for Alzheimer's disease dementia from clinical notes using natural language processing

IY Oh, SE Schindler, N Ghoshal, AM Lai… - JAMIA …, 2023 - academic.oup.com
Objectives There is much interest in utilizing clinical data for developing prediction models
for Alzheimer’s disease (AD) risk, progression, and outcomes. Existing studies have mostly …

An enhancer: involucrin regulatory module impacts human skin barrier adaptation out-of-Africa and modifies atopic dermatitis risk

…, AD Schmidt, ZA Goodwin, AM Quiggle, IY Oh… - bioRxiv, 2019 - biorxiv.org
The genetic modules that contribute to human evolution are poorly understood. We identified
positive selection for two independent involucrin (IVL) haplotypes in European (CEU) and …