Pathogenic variants in CRX have distinct cis-regulatory effects on enhancers and silencers in photoreceptors
Dozens of variants in the gene for the homeodomain transcription factor (TF) cone-rod
homeobox (CRX) are linked with human blinding diseases that vary in their severity and age of …
homeobox (CRX) are linked with human blinding diseases that vary in their severity and age of …
[HTML][HTML] The molecular revolution in cutaneous biology: EDC and locus control
IY Oh, C de Guzman Strong - Journal of Investigative Dermatology, 2017 - Elsevier
The epidermal differentiation complex (EDC) locus consists of a cluster of genes important
for the terminal differentiation of the epidermis. While early studies identified the functional …
for the terminal differentiation of the epidermis. While early studies identified the functional …
[HTML][HTML] Regulation of the dynamic chromatin architecture of the epidermal differentiation complex is mediated by a c-Jun/AP-1-modulated enhancer
IY Oh, DM Albea, ZA Goodwin, AM Quiggle… - Journal of Investigative …, 2014 - Elsevier
The epidermal differentiation complex (EDC) locus comprises a syntenic and linear cluster
of genes whose concomitant expression is a hallmark feature of differentiation in the …
of genes whose concomitant expression is a hallmark feature of differentiation in the …
[HTML][HTML] Selective sweep for an enhancer involucrin allele identifies skin barrier adaptation out of Africa
The genetic modules that contribute to human evolution are poorly understood. Here we
investigate positive selection in the Epidermal Differentiation Complex locus for skin barrier …
investigate positive selection in the Epidermal Differentiation Complex locus for skin barrier …
Leveraging GPT-4 for Identifying Cancer Phenotypes in Electronic Health Records: A Performance Comparison between GPT-4, GPT-3.5-turbo, Flan-T5 and spaCy's …
Objective Accurately identifying clinical phenotypes from Electronic Health Records (EHRs)
provides additional insights into patients’ health, especially when such information is …
provides additional insights into patients’ health, especially when such information is …
Machine Learning for Benchmarking Adolescent Idiopathic Scoliosis Surgery Outcomes
Study Design. Retrospective cohort. Objective. The aim of this study was to design a risk-stratified
benchmarking tool for adolescent idiopathic scoliosis (AIS) surgeries. Summary of …
benchmarking tool for adolescent idiopathic scoliosis (AIS) surgeries. Summary of …
High-throughput identification of gene regulatory sequences using next-generation sequencing of circular chromosome conformation capture (4C-seq)
EA Brettmann, IY Oh, C de Guzman Strong - JoVE (Journal of Visualized …, 2018 - jove.com
The identification of regulatory elements for a given target gene poses a significant technical
challenge owing to the variability in the positioning and effect sizes of regulatory elements …
challenge owing to the variability in the positioning and effect sizes of regulatory elements …
High-Throughput Analysis of Retinal Cis-Regulatory Networks by Massively Parallel Reporter Assays
Inherited retinal degenerations are diverse and debilitating blinding diseases. Genetic tests
and exome sequencing have identified mutations in many protein-coding genes associated …
and exome sequencing have identified mutations in many protein-coding genes associated …
Extraction of clinical phenotypes for Alzheimer's disease dementia from clinical notes using natural language processing
Objectives There is much interest in utilizing clinical data for developing prediction models
for Alzheimer’s disease (AD) risk, progression, and outcomes. Existing studies have mostly …
for Alzheimer’s disease (AD) risk, progression, and outcomes. Existing studies have mostly …
An enhancer: involucrin regulatory module impacts human skin barrier adaptation out-of-Africa and modifies atopic dermatitis risk
The genetic modules that contribute to human evolution are poorly understood. We identified
positive selection for two independent involucrin (IVL) haplotypes in European (CEU) and …
positive selection for two independent involucrin (IVL) haplotypes in European (CEU) and …