[PDF][PDF] The aspartic protease Ddi1 contributes to DNA-protein crosslink repair in yeast

N Serbyn, A Noireterre, I Bagdiul, M Plank, AH Michel… - Molecular cell, 2020 - cell.com
Naturally occurring or drug-induced DNA-protein crosslinks (DPCs) interfere with key DNA
transactions if not repaired in a timely manner. The unique family of DPC-specific proteases …

Structure, phosphorylation and U2AF65 binding of the N-terminal domain of splicing factor 1 during 3′-splice site recognition

Y Zhang, T Madl, I Bagdiul, T Kern… - Nucleic acids …, 2013 - academic.oup.com
Recognition of the 3′-splice site is a key step in pre-mRNA splicing and accomplished by a
dynamic complex comprising splicing factor 1 (SF1) and the U2 snRNP auxiliary factor 65-…

Mammalian splicing factor SF1 interacts with SURP domains of U2 snRNP-associated proteins

A Crisci, F Raleff, I Bagdiul, M Raabe… - Nucleic acids …, 2015 - academic.oup.com
Splicing factor 1 (SF1) recognizes the branch point sequence (BPS) at the 3′ splice site
during the formation of early complex E, thereby pre-bulging the BPS adenosine, thought to …

[PDF][PDF] SUMO orchestrates multiple alternative DNA-protein crosslink repair pathways

N Serbyn, I Bagdiul, A Noireterre, AH Michel… - Cell reports, 2021 - cell.com
Endogenous metabolites, environmental agents, and therapeutic drugs promote formation
of covalent DNA-protein crosslinks (DPCs). Persistent DPCs compromise genome integrity …

Ubx5‐Cdc48 assists the protease Wss1 at DNA‐protein crosslink sites in yeast

A Noireterre, N Serbyn, I Bagdiul, F Stutz - The EMBO Journal, 2023 - embopress.org
DNA‐protein crosslinks (DPCs) pose a serious threat to genome stability. The yeast proteases
Wss1, 26S proteasome, and Ddi1 are safeguards of genome integrity by acting on a …

[CITATION][C] Abscisic acid does not influence the subcellular distribution of the HYL1 protein from Arabidopsis thaliana.

…, B Szarzyńska, M Sawczak, I Bagdiul… - Acta Biochimica …, 2008 - ojs.ptbioch.edu.pl
HYL1 is a nuclear protein involved in the processing of miRNAs but its exact function remains
unknown. Arabidopsis thaliana hyl1 mutants exhibit hypersensitivity to ABA. We decided to …

An autoinhibitory intramolecular interaction proof-reads RNA recognition by the essential splicing factor U2AF2

HS Kang, C Sánchez-Rico… - Proceedings of the …, 2020 - National Acad Sciences
… We thank Juan Valcárcel, Sophie Bonnal, and members of the Sattler and König groups
for inspiring discussions; Ivona Bagdiul (University of Geneva) for cloning of initial constructs; …

Characterization of the RNA Degradosome of Pseudoalteromonas haloplanktis: Conservation of the RNase E-RhlB Interaction in the Gammaproteobacteria

S Aït-Bara, AJ Carpousis - Journal of bacteriology, 2010 - Am Soc Microbiol
… haloplanktis containing the origin of replication was cloned into pJB3 Ivona Bagdiul
Bagdiul, M. Dreyfus, and V. Khemici for providing the plasmids and strains; members of the …

[PDF][PDF] Analysis of Interacting Partners and Alternative Splicing Isoforms of Human Splicing Factor 1

A Crisci - 2014 - access.archive-ouverte.unige.ch
… I performed the protein-protein interaction assays with the support of our technical staff,
Flore Raleff and Ivona Bagdiul. SURP domains are present in proteins that function in splicing …

[HTML][HTML] The yeast proteases Ddi1 and Wss1 are both involved in the DNA replication stress response

M Svoboda, J Konvalinka, JF Trempe, KG Saskova - DNA repair, 2019 - Elsevier
Genome integrity and cell survival are dependent on proper replication stress response.
Multiple repair pathways addressing obstacles generated by replication stress arose during …