User profiles for J. A. Castro-Mondragon
Jaime A Castro-MondragonBioinformatician, Nykode Therapeutics AS Verified email at nykode.com Cited by 6001 |
JASPAR 2022: the 9th release of the open-access database of transcription factor binding profiles
JA Castro-Mondragon, R Riudavets-Puig… - Nucleic acids …, 2022 - academic.oup.com
JASPAR ( http://jaspar.genereg.net/ ) is an open-access database containing manually
curated, non-redundant transcription factor (TF) binding profiles for TFs across six taxonomic …
curated, non-redundant transcription factor (TF) binding profiles for TFs across six taxonomic …
JASPAR 2020: update of the open-access database of transcription factor binding profiles
JASPAR ( http://jaspar.genereg.net ) is an open-access database of curated, non-redundant
transcription factor (TF)-binding profiles stored as position frequency matrices (PFMs) for …
transcription factor (TF)-binding profiles stored as position frequency matrices (PFMs) for …
JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework
…, M Gheorghe, JA Castro-Mondragon… - Nucleic acids …, 2018 - academic.oup.com
JASPAR ( http://jaspar.genereg.net ) is an open-access database of curated, non-redundant
transcription factor (TF)-binding profiles stored as position frequency matrices (PFMs) and …
transcription factor (TF)-binding profiles stored as position frequency matrices (PFMs) and …
RegulonDB version 9.0: high-level integration of gene regulation, coexpression, motif clustering and beyond
…, L Pannier, JA Castro-Mondragón… - Nucleic acids …, 2016 - academic.oup.com
RegulonDB ( http://regulondb.ccg.unam.mx ) is one of the most useful and important resources
on bacterial gene regulation,as it integrates the scattered scientific knowledge of the best-…
on bacterial gene regulation,as it integrates the scattered scientific knowledge of the best-…
JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles
…, R Blanc-Mathieu, JA Castro-Mondragon… - Nucleic Acids …, 2024 - academic.oup.com
JASPAR ( https://jaspar.elixir.no/ ) is a widely-used open-access database presenting manually
curated high-quality and non-redundant DNA-binding profiles for transcription factors (…
curated high-quality and non-redundant DNA-binding profiles for transcription factors (…
RSAT 2015: regulatory sequence analysis tools
…, C Herrmann, JA Castro-Mondragon… - Nucleic acids …, 2015 - academic.oup.com
… , IUPAC and logos) at each branch of the trees and generates a dynamic report enabling
users to customize the graphical representations of motif similarities (Castro-Mondragon, JA et …
users to customize the graphical representations of motif similarities (Castro-Mondragon, JA et …
Genome-wide characterization of mammalian promoters with distal enhancer functions
…, AO Galindo-Albarrán, JA Castro-Mondragon… - Nature …, 2017 - nature.com
Gene expression in mammals is precisely regulated by the combination of promoters and
gene-distal regulatory regions, known as enhancers. Several studies have suggested that …
gene-distal regulatory regions, known as enhancers. Several studies have suggested that …
RSAT 2018: regulatory sequence analysis tools 20th anniversary
…, JA Castro-Mondragon… - Nucleic acids …, 2018 - academic.oup.com
RSAT (Regulatory Sequence Analysis Tools) is a suite of modular tools for the detection and
the analysis of cis-regulatory elements in genome sequences. Its main applications are (i) …
the analysis of cis-regulatory elements in genome sequences. Its main applications are (i) …
RSAT 2022: regulatory sequence analysis tools
W Santana-Garcia, JA Castro-Mondragon… - Nucleic Acids …, 2022 - academic.oup.com
RSAT (Regulatory Sequence Analysis Tools) enables the detection and the analysis of cis-regulatory
elements in genomic sequences. This software suite performs (i) de novo motif …
elements in genomic sequences. This software suite performs (i) de novo motif …
RSAT matrix-clustering: dynamic exploration and redundancy reduction of transcription factor binding motif collections
JA Castro-Mondragon, S Jaeger, D Thieffry… - Nucleic Acids …, 2017 - academic.oup.com
Transcription factor (TF) databases contain multitudes of binding motifs (TFBMs) from various
sources, from which non-redundant collections are derived by manual curation. The advent …
sources, from which non-redundant collections are derived by manual curation. The advent …