User profiles for J. C. Marioni
John MarioniGenentech Verified email at gene.com Cited by 44679 |
[PDF][PDF] The technology and biology of single-cell RNA sequencing
The differences between individual cells can have profound functional consequences, in
both unicellular and multicellular organisms. Recently developed single-cell mRNA-…
both unicellular and multicellular organisms. Recently developed single-cell mRNA-…
Computational and analytical challenges in single-cell transcriptomics
The development of high-throughput RNA sequencing (RNA-seq) at the single-cell level has
already led to profound new discoveries in biology, ranging from the identification of novel …
already led to profound new discoveries in biology, ranging from the identification of novel …
[HTML][HTML] Eleven grand challenges in single-cell data science
The recent boom in microfluidics and combinatorial indexing strategies, combined with low
sequencing costs, has empowered single-cell sequencing technology. Thousands—or even …
sequencing costs, has empowered single-cell sequencing technology. Thousands—or even …
RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays
Ultra-high-throughput sequencing is emerging as an attractive alternative to microarrays for
genotyping, analysis of methylation patterns, and identification of transcription factor binding …
genotyping, analysis of methylation patterns, and identification of transcription factor binding …
The human cell atlas
10.7554/eLife.27041.001 The recent advent of methods for high-throughput single-cell
molecular profiling has catalyzed a growing sense in the scientific community that the time is ripe …
molecular profiling has catalyzed a growing sense in the scientific community that the time is ripe …
Intratumor heterogeneity in human glioblastoma reflects cancer evolutionary dynamics
Glioblastoma (GB) is the most common and aggressive primary brain malignancy, with poor
prognosis and a lack of effective therapeutic options. Accumulating evidence suggests that …
prognosis and a lack of effective therapeutic options. Accumulating evidence suggests that …
Batch effects in single-cell RNA-sequencing data are corrected by matching mutual nearest neighbors
Large-scale single-cell RNA sequencing (scRNA-seq) data sets that are produced in
different laboratories and at different times contain batch effects that may compromise the …
different laboratories and at different times contain batch effects that may compromise the …
Understanding mechanisms underlying human gene expression variation with RNA sequencing
Understanding the genetic mechanisms underlying natural variation in gene expression is a
central goal of both medical and evolutionary genetics, and studies of expression …
central goal of both medical and evolutionary genetics, and studies of expression …
[HTML][HTML] Single-cell multi-omics analysis of the immune response in COVID-19
…, SA Teichmann, MR Clatworthy, JC Marioni… - Nature medicine, 2021 - nature.com
Abstract Analysis of human blood immune cells provides insights into the coordinated
response to viral infections such as severe acute respiratory syndrome coronavirus 2, which …
response to viral infections such as severe acute respiratory syndrome coronavirus 2, which …
[HTML][HTML] A step-by-step workflow for low-level analysis of single-cell RNA-seq data with Bioconductor
Single-cell RNA sequencing (scRNA-seq) is widely used to profile the transcriptome of
individual cells. This provides biological resolution that cannot be matched by bulk RNA …
individual cells. This provides biological resolution that cannot be matched by bulk RNA …