User profiles for J. C. Marioni

John Marioni

Genentech
Verified email at gene.com
Cited by 44679

[PDF][PDF] The technology and biology of single-cell RNA sequencing

AA Kolodziejczyk, JK Kim, V Svensson, JC Marioni… - Molecular cell, 2015 - cell.com
The differences between individual cells can have profound functional consequences, in
both unicellular and multicellular organisms. Recently developed single-cell mRNA-…

Computational and analytical challenges in single-cell transcriptomics

O Stegle, SA Teichmann, JC Marioni - Nature Reviews Genetics, 2015 - nature.com
The development of high-throughput RNA sequencing (RNA-seq) at the single-cell level has
already led to profound new discoveries in biology, ranging from the identification of novel …

[HTML][HTML] Eleven grand challenges in single-cell data science

…, TH Kuo, BPF Lelieveldt, II Mandoiu, JC Marioni… - Genome biology, 2020 - Springer
The recent boom in microfluidics and combinatorial indexing strategies, combined with low
sequencing costs, has empowered single-cell sequencing technology. Thousands—or even …

RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays

JC Marioni, CE Mason, SM Mane, M Stephens… - Genome …, 2008 - genome.cshlp.org
Ultra-high-throughput sequencing is emerging as an attractive alternative to microarrays for
genotyping, analysis of methylation patterns, and identification of transcription factor binding …

The human cell atlas

…, E Lundberg, J Lundeberg, P Majumder, JC Marioni… - elife, 2017 - elifesciences.org
10.7554/eLife.27041.001 The recent advent of methods for high-throughput single-cell
molecular profiling has catalyzed a growing sense in the scientific community that the time is ripe …

Intratumor heterogeneity in human glioblastoma reflects cancer evolutionary dynamics

…, A Touloumis, VP Collins, JC Marioni… - Proceedings of the …, 2013 - National Acad Sciences
Glioblastoma (GB) is the most common and aggressive primary brain malignancy, with poor
prognosis and a lack of effective therapeutic options. Accumulating evidence suggests that …

Batch effects in single-cell RNA-sequencing data are corrected by matching mutual nearest neighbors

L Haghverdi, ATL Lun, MD Morgan, JC Marioni - Nature biotechnology, 2018 - nature.com
Large-scale single-cell RNA sequencing (scRNA-seq) data sets that are produced in
different laboratories and at different times contain batch effects that may compromise the …

Understanding mechanisms underlying human gene expression variation with RNA sequencing

JK Pickrell, JC Marioni, AA Pai, JF Degner… - Nature, 2010 - nature.com
Understanding the genetic mechanisms underlying natural variation in gene expression is a
central goal of both medical and evolutionary genetics, and studies of expression …

[HTML][HTML] Single-cell multi-omics analysis of the immune response in COVID-19

…, SA Teichmann, MR Clatworthy, JC Marioni… - Nature medicine, 2021 - nature.com
Abstract Analysis of human blood immune cells provides insights into the coordinated
response to viral infections such as severe acute respiratory syndrome coronavirus 2, which …

[HTML][HTML] A step-by-step workflow for low-level analysis of single-cell RNA-seq data with Bioconductor

ATL Lun, DJ McCarthy, JC Marioni - F1000Research, 2016 - ncbi.nlm.nih.gov
Single-cell RNA sequencing (scRNA-seq) is widely used to profile the transcriptome of
individual cells. This provides biological resolution that cannot be matched by bulk RNA …