[HTML][HTML] Reprogramming of DNA methylation in pollen guides epigenetic inheritance via small RNA

JP Calarco, F Borges, MTA Donoghue, F Van Ex… - Cell, 2012 - cell.com
Epigenetic inheritance is more widespread in plants than in mammals, in part because
mammals erase epigenetic information by germline reprogramming. We sequenced the …

Par6–aPKC uncouples ErbB2 induced disruption of polarized epithelial organization from proliferation control

…, ME Nolan, JP Calarco, AZ Rosenberg, JP Fawcett… - Nature cell …, 2006 - nature.com
The polarized glandular organization of epithelial cells is frequently lost during development
of carcinoma. However, the specific oncogene targets responsible for polarity disruption …

Dynamics of BAF–Polycomb complex opposition on heterochromatin in normal and oncogenic states

C Kadoch, RT Williams, JP Calarco, EL Miller… - Nature …, 2017 - nature.com
The opposition between Polycomb repressive complexes (PRCs) and BAF (mSWI/SNF)
complexes has a critical role in both development and disease. Mutations in the genes encoding …

Smarca4 ATPase mutations disrupt direct eviction of PRC1 from chromatin

BZ Stanton, C Hodges, JP Calarco, SMG Braun… - Nature …, 2017 - nature.com
Trithorax-group proteins and their mammalian homologs, including those in BAF (mSWI/SNF)
complexes, are known to oppose the activity of Polycomb repressive complexes (PRCs) 1 , …

Global analysis of alternative splicing differences between humans and chimpanzees

JA Calarco, Y Xing, M Cáceres, JP Calarco… - Genes & …, 2007 - genesdev.cshlp.org
Alternative splicing is a powerful mechanism affording extensive proteomic and regulatory
diversity from a limited repertoire of genes. However, the extent to which alternative splicing …

[HTML][HTML] Rapid and reversible epigenome editing by endogenous chromatin regulators

…, JG Kirkland, EJ Chory, D Husmann, JP Calarco… - Nature …, 2017 - nature.com
Calarco, a brilliant scientist, dedicated colleague, and true friend. We thank the Crabtree lab…
Kamakaka and JA Calarco for helpful discussions and E. Miller for sharing curated GEO data …

[PDF][PDF] Nucleosome turnover regulates histone methylation patterns over the genome

EJ Chory, JP Calarco, NA Hathaway, O Bell, DS Neel… - Molecular cell, 2019 - cell.com
Recent studies have indicated that nucleosome turnover is rapid, occurring several times
per cell cycle. To access the effect of nucleosome turnover on the epigenetic landscape, we …

RNA-directed DNA methylation regulates parental genomic imprinting at several loci in Arabidopsis

TM Vu, M Nakamura, JP Calarco, D Susaki… - …, 2013 - journals.biologists.com
In mammals and plants, parental genomic imprinting restricts the expression of specific loci
to one parental allele. Imprinting in mammals relies on sex-dependent de novo deposition of …

[HTML][HTML] FACS-based purification of Arabidopsis microspores, sperm cells and vegetative nuclei

F Borges, R Gardner, T Lopes, JP Calarco, LC Boavida… - Plant methods, 2012 - Springer
Background The male germline in flowering plants differentiates by asymmetric division of
haploid uninucleated microspores, giving rise to a vegetative cell enclosing a smaller …

TOP2 synergizes with BAF chromatin remodeling for both resolution and formation of facultative heterochromatin

…, C Kadoch, CY Chang, JP Calarco… - Nature structural & …, 2017 - nature.com
The resolution and formation of facultative heterochromatin are essential for development,
reprogramming, and oncogenesis. The mechanisms underlying these changes are poorly …