Highly scalable generation of DNA methylation profiles in single cells

…, KA Torkenczy, AJ Fields, D Sun, JR Sinnamon… - Nature …, 2018 - nature.com
We present a highly scalable assay for whole-genome methylation profiling of single cells.
We use our approach, single-cell combinatorial indexing for methylation analysis (sci-MET), …

Site-directed RNA repair of endogenous Mecp2 RNA in neurons

JR Sinnamon, SY Kim, GM Corson… - Proceedings of the …, 2017 - National Acad Sciences
Rett syndrome (RTT) is a debilitating neurological disorder caused by mutations in the gene
encoding the transcription factor Methyl CpG Binding Protein 2 (MECP2). A distinct disorder …

The accessible chromatin landscape of the murine hippocampus at single-cell resolution

JR Sinnamon, KA Torkenczy, MW Linhoff… - Genome …, 2019 - genome.cshlp.org
Here we present a comprehensive map of the accessible chromatin landscape of the
mouse hippocampus at single-cell resolution. Substantial advances of this work include the …

[PDF][PDF] In vivo repair of a protein underlying a neurological disorder by programmable RNA editing

JR Sinnamon, SY Kim, JR Fisk, Z Song, H Nakai… - Cell reports, 2020 - cell.com
Programmable RNA editing is gaining momentum as an approach to repair mutations, but
its efficiency in repairing endogenous mutant RNA in complex tissue is unknown. Here we …

Targeted RNA editing in brainstem alleviates respiratory dysfunction in a mouse model of Rett syndrome

JR Sinnamon, ME Jacobson, JF Yung… - Proceedings of the …, 2022 - National Acad Sciences
Rett syndrome is a neurological disease due to loss-of-function mutations in the transcription
factor, Methyl CpG binding protein 2 (MECP2). Because overexpression of endogenous …

mRNA trafficking and local translation: the Yin and Yang of regulating mRNA localization in neurons

JR Sinnamon, K Czaplinski - Acta Biochim Biophys Sin, 2011 - academic.oup.com
Localized translation and the requisite trafficking of the mRNA template play significant
roles in the nervous system including the establishment of dendrites and axons, axon path-finding…

RNA detection in situ with FISH-STICs

JR Sinnamon, K Czaplinski - Rna, 2014 - rnajournal.cshlp.org
The ability to detect RNA molecules in situ has long had important applications for molecular
biological studies. Enzyme or dye-labeled antisense in vitro runoff transcripts and synthetic …

Hnrpab regulates neural development and neuron cell survival after glutamate stimulation

JR Sinnamon, CB Waddell, S Nik, EI Chen… - Rna, 2012 - rnajournal.cshlp.org
The molecular mechanisms that govern the timing and fate of neural stem-cell differentiation
toward the distinct neural lineages of the nervous system are not well defined. The …

Collaborative meta-analysis finds no evidence of a strong interaction between stress and 5-HTTLPR genotype contributing to the development of depression

…, WJ Peyrot, C Schwahn, G Sinnamon… - Molecular …, 2018 - nature.com
The hypothesis that the S allele of the 5-HTTLPR serotonin transporter promoter region is
associated with increased risk of depression, but only in individuals exposed to stressful …

An analysis of two genome-wide association meta-analyses identifies a new locus for broad depression phenotype

…, M Rivera, TG Schulze, J Shi, S Shyn, GC Sinnamon… - Biological …, 2017 - Elsevier
Background The genetics of depression has been explored in genome-wide association
studies that focused on either major depressive disorder or depressive symptoms with mostly …