User profiles for J. Budczies

Jan Budczies

Professor of Bioinformatics, Institute of Pathology, University Hospital Heidelberg
Verified email at med.uni-heidelberg.de
Cited by 21682

Tumor mutational burden as a predictive biomarker in solid tumors

D Sha, Z Jin, J Budczies, K Kluck, A Stenzinger… - Cancer discovery, 2020 - AACR
Abstract Evaluation of TMB as a predictive biomarker creates the need to harmonize panel-based
TMB estimation and standardize its reporting. TMB can improve the predictive …

[HTML][HTML] The journey of tumor-infiltrating lymphocytes as a biomarker in breast cancer: clinical utility in an era of checkpoint inhibition

S Loi, S Michiels, S Adams, S Loibl, J Budczies… - Annals of …, 2021 - Elsevier
In 2014, we described a method to quantify percentage of tumor-infiltrating lymphocytes (TILs)
on hematoxylin and eosin-stained slides of breast cancer samples using light microscopy …

Strategies for developing Ki67 as a useful biomarker in breast cancer

C Denkert, J Budczies, G von Minckwitz, S Wienert… - The Breast, 2015 - Elsevier
Increased proliferation is a hallmark of malignant tumors. The proliferation marker Ki67 has
been investigated as a breast cancer biomarker, but despite 32 years of research the best …

Tumour-infiltrating lymphocytes and prognosis in different subtypes of breast cancer: a pooled analysis of 3771 patients treated with neoadjuvant therapy

…, BI Heppner, KE Weber, J Budczies, J Huober… - The lancet …, 2018 - thelancet.com
Background Tumour-infiltrating lymphocytes (TILs) are predictive for response to neoadjuvant
chemotherapy in triple-negative breast cancer (TNBC) and HER2-positive breast cancer, …

An online survival analysis tool to rapidly assess the effect of 22,277 genes on breast cancer prognosis using microarray data of 1,809 patients

…, A Lanczky, AC Eklund, C Denkert, J Budczies… - Breast cancer research …, 2010 - Springer
Validating prognostic or predictive candidate genes in appropriately powered breast cancer
cohorts are of utmost interest. Our aim was to develop an online tool to draw survival plots, …

Tumor-associated lymphocytes as an independent predictor of response to neoadjuvant chemotherapy in breast cancer

…, M Roller, BM Müller, M Komor, J Budczies… - Journal of clinical …, 2010 - ascopubs.org
Purpose Preclinical data suggest a contribution of the immune system to chemotherapy
response. In this study, we investigated the prespecified hypothesis that the presence of a …

[HTML][HTML] Online survival analysis software to assess the prognostic value of biomarkers using transcriptomic data in non-small-cell lung cancer

B Győrffy, P Surowiak, J Budczies, A Lánczky - PloS one, 2013 - journals.plos.org
In the last decade, optimized treatment for non-small cell lung cancer had lead to improved
prognosis, but the overall survival is still very short. To further understand the molecular basis …

[HTML][HTML] Cutoff Finder: a comprehensive and straightforward Web application enabling rapid biomarker cutoff optimization

J Budczies, F Klauschen, BV Sinn, B Győrffy… - PloS one, 2012 - journals.plos.org
Gene or protein expression data are usually represented by metric or at least ordinal
variables. In order to translate a continuous variable into a clinical decision, it is necessary to …

The novel histologic International Association for the Study of Lung Cancer/American Thoracic Society/European Respiratory Society classification system of lung …

…, P Schirmacher, PA Schnabel, J Budczies… - Journal of clinical …, 2012 - ascopubs.org
Purpose Our aim was to analyze and validate the prognostic impact of the novel
International Association for the Study of Lung Cancer (IASLC)/American Thoracic Society (ATS)/…

Novel theranostic opportunities offered by characterization of altered membrane lipid metabolism in breast cancer progression

…, S Brockmöller, T Seppänen-Laakso, J Budczies… - Cancer research, 2011 - AACR
Activation of lipid metabolism is an early event in carcinogenesis and a central hallmark of
many cancers. However, the precise molecular composition of lipids in tumors remains …