User profiles for J. Budczies
Jan BudcziesProfessor of Bioinformatics, Institute of Pathology, University Hospital Heidelberg Verified email at med.uni-heidelberg.de Cited by 21682 |
Tumor mutational burden as a predictive biomarker in solid tumors
Abstract Evaluation of TMB as a predictive biomarker creates the need to harmonize panel-based
TMB estimation and standardize its reporting. TMB can improve the predictive …
TMB estimation and standardize its reporting. TMB can improve the predictive …
[HTML][HTML] The journey of tumor-infiltrating lymphocytes as a biomarker in breast cancer: clinical utility in an era of checkpoint inhibition
In 2014, we described a method to quantify percentage of tumor-infiltrating lymphocytes (TILs)
on hematoxylin and eosin-stained slides of breast cancer samples using light microscopy …
on hematoxylin and eosin-stained slides of breast cancer samples using light microscopy …
Strategies for developing Ki67 as a useful biomarker in breast cancer
C Denkert, J Budczies, G von Minckwitz, S Wienert… - The Breast, 2015 - Elsevier
Increased proliferation is a hallmark of malignant tumors. The proliferation marker Ki67 has
been investigated as a breast cancer biomarker, but despite 32 years of research the best …
been investigated as a breast cancer biomarker, but despite 32 years of research the best …
Tumour-infiltrating lymphocytes and prognosis in different subtypes of breast cancer: a pooled analysis of 3771 patients treated with neoadjuvant therapy
…, BI Heppner, KE Weber, J Budczies, J Huober… - The lancet …, 2018 - thelancet.com
Background Tumour-infiltrating lymphocytes (TILs) are predictive for response to neoadjuvant
chemotherapy in triple-negative breast cancer (TNBC) and HER2-positive breast cancer, …
chemotherapy in triple-negative breast cancer (TNBC) and HER2-positive breast cancer, …
An online survival analysis tool to rapidly assess the effect of 22,277 genes on breast cancer prognosis using microarray data of 1,809 patients
Validating prognostic or predictive candidate genes in appropriately powered breast cancer
cohorts are of utmost interest. Our aim was to develop an online tool to draw survival plots, …
cohorts are of utmost interest. Our aim was to develop an online tool to draw survival plots, …
Tumor-associated lymphocytes as an independent predictor of response to neoadjuvant chemotherapy in breast cancer
…, M Roller, BM Müller, M Komor, J Budczies… - Journal of clinical …, 2010 - ascopubs.org
Purpose Preclinical data suggest a contribution of the immune system to chemotherapy
response. In this study, we investigated the prespecified hypothesis that the presence of a …
response. In this study, we investigated the prespecified hypothesis that the presence of a …
[HTML][HTML] Online survival analysis software to assess the prognostic value of biomarkers using transcriptomic data in non-small-cell lung cancer
B Győrffy, P Surowiak, J Budczies, A Lánczky - PloS one, 2013 - journals.plos.org
In the last decade, optimized treatment for non-small cell lung cancer had lead to improved
prognosis, but the overall survival is still very short. To further understand the molecular basis …
prognosis, but the overall survival is still very short. To further understand the molecular basis …
[HTML][HTML] Cutoff Finder: a comprehensive and straightforward Web application enabling rapid biomarker cutoff optimization
Gene or protein expression data are usually represented by metric or at least ordinal
variables. In order to translate a continuous variable into a clinical decision, it is necessary to …
variables. In order to translate a continuous variable into a clinical decision, it is necessary to …
The novel histologic International Association for the Study of Lung Cancer/American Thoracic Society/European Respiratory Society classification system of lung …
…, P Schirmacher, PA Schnabel, J Budczies… - Journal of clinical …, 2012 - ascopubs.org
Purpose Our aim was to analyze and validate the prognostic impact of the novel
International Association for the Study of Lung Cancer (IASLC)/American Thoracic Society (ATS)/…
International Association for the Study of Lung Cancer (IASLC)/American Thoracic Society (ATS)/…
Novel theranostic opportunities offered by characterization of altered membrane lipid metabolism in breast cancer progression
…, S Brockmöller, T Seppänen-Laakso, J Budczies… - Cancer research, 2011 - AACR
Activation of lipid metabolism is an early event in carcinogenesis and a central hallmark of
many cancers. However, the precise molecular composition of lipids in tumors remains …
many cancers. However, the precise molecular composition of lipids in tumors remains …