Transcriptomics at maize embryo/endosperm interfaces identifies a transcriptionally distinct endosperm subdomain adjacent to the embryo scutellum

NM Doll, J Just, V Brunaud, J Caïus, A Grimault… - The Plant …, 2020 - academic.oup.com
Seeds are complex biological systems comprising three genetically distinct tissues nested
one inside another (embryo, endosperm, and maternal tissues). However, the complexity of …

Synthetic data sets for the identification of key ingredients for RNA-seq differential analysis

…, E Blondet, A Rau, O Rogier, J Caius… - Briefings in …, 2018 - academic.oup.com
Numerous statistical pipelines are now available for the differential analysis of gene
expression measured with RNA-sequencing technology. Most of them are based on similar …

RNAi suppression of DNA methylation affects the drought stress response and genome integrity in transgenic poplar

…, MC Lesage‐Descauses, S Citerne, J Caius… - New …, 2021 - Wiley Online Library
Trees are long‐lived organisms that continuously adapt to their environments, a process in
which epigenetic mechanisms are likely to play a key role. Via downregulation of the …

Constitutive salicylic acid accumulation in pi4kIIIβ1β2 Arabidopsis plants stunts rosette but not root growth

…, E López Maseda, PI Dobrev, J Caius… - New …, 2014 - Wiley Online Library
Phospholipids have recently been found to be integral elements of hormone signalling
pathways. An Arabidopsis thaliana double mutant in two type III phosphatidylinositol‐4‐kinases ( …

A guanosine tetraphosphate (ppGpp) mediated brake on photosynthesis is required for acclimation to nitrogen limitation in Arabidopsis

…, M Belaroussi, M Dussenne, B Ksas, S Citerne, J Caius… - Elife, 2022 - elifesciences.org
Guanosine pentaphosphate and tetraphosphate (together referred to as ppGpp) are
hyperphosphorylated nucleotides found in bacteria and the chloroplasts of plants and algae. In …

[HTML][HTML] Genotypic variation of nitrogen use efficiency and amino acid metabolism in barley

…, A Marmagne, M Arkoun, F Soulay, J Caïus… - Frontiers in Plant …, 2022 - frontiersin.org
Owing to the large genetic diversity of barley and its resilience under harsh environments, this
crop is of great value for agroecological transition and the need for reduction of nitrogen (N…

A derived ZW chromosome system in Amborella trichopoda, representing the sister lineage to all other extant flowering plants

J Käfer, A Bewick, A Andres‐Robin… - New …, 2022 - Wiley Online Library
The genetic basis and evolution of sex determination in dioecious plants is emerging as an
active area of research with exciting advances in genome sequencing and analysis …

Translatome profiling in dormant and nondormant sunflower (Helianthus annuus) seeds highlights post‐transcriptional regulation of germination

…, J Leymarie, H El‐Maarouf‐Bouteau, J Caius… - New …, 2014 - Wiley Online Library
Seed dormancy, which blocks germination in apparently favourable conditions, is a key
regulatory control point of plant population establishment. As germination requires de novo …

[HTML][HTML] Accuracy of RNAseq based SNP discovery and genotyping in Populusnigra

…, S Balzergue, V Brunaud, J Caius… - BMC genomics, 2018 - Springer
Backgroud Populus nigra is a major tree species of ecological and economic importance for
which several initiatives have been set up to create genomic resources. In order to access …

[HTML][HTML] The genomic impact of mycoheterotrophy in orchids

M Jąkalski, J Minasiewicz, J Caius, M May… - Frontiers in Plant …, 2021 - frontiersin.org
Mycoheterotrophic plants have lost the ability to photosynthesize and obtain essential mineral
and organic nutrients from associated soil fungi. Despite involving radical changes in life …