[HTML][HTML] EGASP: the human ENCODE genome annotation assessment project

…, R Castelo, E Eyras, C Ucla, TR Gingeras, J Harrow… - Genome biology, 2006 - Springer
Background We present the results of EGASP, a community experiment to assess the state-of-the-art
in genome annotation within the ENCODE regions, which span 1% of the human …

[HTML][HTML] Landscape of transcription in human cells

…, J Wrobel, Y Yu, X Ruan, Y Hayashizaki, J Harrow… - Nature, 2012 - nature.com
Eukaryotic cells make many types of primary and processed RNAs that are found either in
specific subcellular compartments or throughout the cells. A complete catalogue of these …

GENCODE: the reference human genome annotation for The ENCODE Project

J Harrow, A Frankish, JM Gonzalez, E Tapanari… - Genome …, 2012 - genome.cshlp.org
The GENCODE Consortium aims to identify all gene features in the human genome using a
combination of computational analysis, manual annotation, and experimental validation. …

The status of the human gene catalogue

…, T Faial, A Frankish, T Gingeras, R Guigo, JL Harrow… - Nature, 2023 - nature.com
Scientists have been trying to identify every gene in the human genome since the initial draft
was published in 2001. In the years since, much progress has been made in identifying …

The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression

…, TJ Hubbard, C Notredame, J Harrow… - Genome …, 2012 - genome.cshlp.org
The human genome contains many thousands of long noncoding RNAs (lncRNAs). While
several studies have demonstrated compelling biological and disease roles for individual …

Ensembl 2014

…, F Cunningham, J Harrow, J Herrero… - Nucleic acids …, 2014 - academic.oup.com
Ensembl ( http://www.ensembl.org ) creates tools and data resources to facilitate genomic
analysis in chordate species with an emphasis on human, major vertebrate model organisms …

A conditional knockout resource for the genome-wide study of mouse gene function

…, J Harrow, T Cox, D Jackson, J Severin, P Biggs, J Fu… - Nature, 2011 - nature.com
Gene targeting in embryonic stem cells has become the principal technology for manipulation
of the mouse genome, offering unrivalled accuracy in allele design and access to …

Ensembl 2015

…, A Zadissa, BL Aken, E Birney, J Harrow… - Nucleic acids …, 2015 - academic.oup.com
Ensembl ( http://www.ensembl.org ) is a genomic interpretation system providing the most up-to-date
annotations, querying tools and access methods for chordates and key model …

Ensembl 2016

…, SP Wilder, A Zadissa, E Birney, J Harrow… - Nucleic acids …, 2016 - academic.oup.com
The Ensembl project ( http://www.ensembl.org ) is a system for genome annotation, analysis,
storage and dissemination designed to facilitate the access of genomic annotation from …

A systematic survey of loss-of-function variants in human protein-coding genes

…, ET Dermitzakis, JK Pritchard, JC Barrett, J Harrow… - Science, 2012 - science.org
Genome-sequencing studies indicate that all humans carry many genetic variants predicted
to cause loss of function (LoF) of protein-coding genes, suggesting unexpected redundancy …