The complete sequence of a human genome
…, P Kerpedjiev, M Kirsche, M Kolmogorov, J Korlach… - Science, 2022 - science.org
Since its initial release in 2000, the human reference genome has covered only the
euchromatic fraction of the genome, leaving important heterochromatic regions unfinished. …
euchromatic fraction of the genome, leaving important heterochromatic regions unfinished. …
Real-time DNA sequencing from single polymerase molecules
…, D Wu, A Yang, D Zaccarin, P Zhao, F Zhong, J Korlach… - Science, 2009 - science.org
We present single-molecule, real-time sequencing data obtained from a DNA polymerase
performing uninterrupted template-directed synthesis using four distinguishable fluorescently …
performing uninterrupted template-directed synthesis using four distinguishable fluorescently …
[HTML][HTML] Towards complete and error-free genome assemblies of all vertebrate species
High-quality and complete reference genome assemblies are fundamental for the application
of genomics to biology, disease, and biodiversity conservation. However, such assemblies …
of genomics to biology, disease, and biodiversity conservation. However, such assemblies …
Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data
We present a hierarchical genome-assembly process (HGAP) for high-quality de novo microbial
genome assemblies using only a single, long-insert shotgun DNA library in conjunction …
genome assemblies using only a single, long-insert shotgun DNA library in conjunction …
Going beyond five bases in DNA sequencing
J Korlach, SW Turner - Current opinion in structural biology, 2012 - Elsevier
… base modifications have been described to affect specific functions, such as uracil for important
roles in innate and adaptive immunology [21], β-d-glucopyranosyloxymethyluracil (base J…
roles in innate and adaptive immunology [21], β-d-glucopyranosyloxymethyluracil (base J…
Direct detection of DNA methylation during single-molecule, real-time sequencing
…, JH Lee, KJ Travers, EC Olivares, TA Clark, J Korlach… - Nature …, 2010 - nature.com
We describe the direct detection of DNA methylation, without bisulfite conversion, through
single-molecule, real-time (SMRT) sequencing. In SMRT sequencing, DNA polymerases …
single-molecule, real-time (SMRT) sequencing. In SMRT sequencing, DNA polymerases …
Zero-mode waveguides for single-molecule analysis at high concentrations
MJ Levene, J Korlach, SW Turner, M Foquet… - science, 2003 - science.org
Optical approaches for observing the dynamics of single molecules have required pico- to
nanomolar concentrations of fluorophore in order to isolate individual molecules. However, …
nanomolar concentrations of fluorophore in order to isolate individual molecules. However, …
Resolving the complexity of the human genome using single-molecule sequencing
…, JA Stamatoyannopoulos, MW Hunkapiller, J Korlach… - Nature, 2015 - nature.com
The human genome is arguably the most complete mammalian reference assembly 1 , 2 , 3
, yet more than 160 euchromatic gaps remain 4 , 5 , 6 and aspects of its structural variation …
, yet more than 160 euchromatic gaps remain 4 , 5 , 6 and aspects of its structural variation …
[HTML][HTML] The vaginal microbiome and preterm birth
…, SV Huzurbazar, EM Jackson, E Smirnova, J Korlach… - Nature medicine, 2019 - nature.com
The incidence of preterm birth exceeds 10% worldwide. There are significant disparities in
the frequency of preterm birth among populations within countries, and women of African …
the frequency of preterm birth among populations within countries, and women of African …
[HTML][HTML] Multi-platform discovery of haplotype-resolved structural variation in human genomes
The incomplete identification of structural variants (SVs) from whole-genome sequencing
data limits studies of human genetic diversity and disease association. Here, we apply a suite …
data limits studies of human genetic diversity and disease association. Here, we apply a suite …