User profiles for J. Ponomarenko
Julia PonomarenkoCentre for Genomic Regulation (CRG), Barcelona, Spain Verified email at crg.eu Cited by 7660 |
Towards a consensus on datasets and evaluation metrics for developing B‐cell epitope prediction tools
…, C Pinilla, JV Ponomarenko… - Journal of Molecular …, 2007 - Wiley Online Library
… Non-redundant datasets of representative threedimensional structures of protein antigens
and antigen–antibody complexes from the PDB were assembled by Dr Julia Ponomarenko. …
and antigen–antibody complexes from the PDB were assembled by Dr Julia Ponomarenko. …
The microbiome in respiratory medicine: current challenges and future perspectives
…, J Ponomarenko, S Sethi, J Dorca… - European …, 2017 - Eur Respiratory Soc
The healthy lung has previously been considered to be a sterile organ because standard
microbiological culture techniques consistently yield negative results. However, culture-…
microbiological culture techniques consistently yield negative results. However, culture-…
The immune epitope database (IEDB) 3.0
…, JA Greenbaum, J Ponomarenko… - Nucleic acids …, 2015 - academic.oup.com
The IEDB, www.iedb.org , contains information on immune epitopes—the molecular targets
of adaptive immune responses—curated from the published literature and submitted by …
of adaptive immune responses—curated from the published literature and submitted by …
[HTML][HTML] ElliPro: a new structure-based tool for the prediction of antibody epitopes
J Ponomarenko, HH Bui, W Li, N Fusseder… - BMC …, 2008 - Springer
Background Reliable prediction of antibody, or B-cell, epitopes remains challenging yet
highly desirable for the design of vaccines and immunodiagnostics. A correlation between …
highly desirable for the design of vaccines and immunodiagnostics. A correlation between …
Immune epitope database analysis resource
Y Kim, J Ponomarenko, Z Zhu, D Tamang… - Nucleic acids …, 2012 - academic.oup.com
The immune epitope database analysis resource (IEDB-AR: http://tools.iedb.org ) is a
collection of tools for prediction and analysis of molecular targets of T- and B-cell immune …
collection of tools for prediction and analysis of molecular targets of T- and B-cell immune …
Immune epitope database analysis resource (IEDB-AR)
We present a new release of the immune epitope database analysis resource (IEDB-AR,
http://tools.immuneepitope.org ), a repository of web-based tools for the prediction and analysis …
http://tools.immuneepitope.org ), a repository of web-based tools for the prediction and analysis …
[HTML][HTML] The immune epitope database and analysis resource: from vision to blueprint
… J Exp Med 168: 559–570. … Moult J, Fidelis K, Zemla A, Hubbard T (2003) Critical
assessment of methods of protein structure prediction (CASP)-round V. Proteins 53: Suppl …
assessment of methods of protein structure prediction (CASP)-round V. Proteins 53: Suppl …
Pre-existing immunity against swine-origin H1N1 influenza viruses in the general human population
…, N Salimi, R Vita, J Ponomarenko… - Proceedings of the …, 2009 - National Acad Sciences
A major concern about the ongoing swine-origin H1N1 influenza virus (S-OIV) outbreak is that
the virus may be so different from seasonal H1N1 that little immune protection exists in the …
the virus may be so different from seasonal H1N1 that little immune protection exists in the …
An atlas of alternative splicing profiles and functional associations reveals new regulatory programs and genes that simultaneously express multiple major isoforms
Alternative splicing (AS) generates remarkable regulatory and proteomic complexity in
metazoans. However, the functions of most AS events are not known, and programs of regulated …
metazoans. However, the functions of most AS events are not known, and programs of regulated …
[HTML][HTML] Antibody-protein interactions: benchmark datasets and prediction tools evaluation
JV Ponomarenko, PE Bourne - BMC structural biology, 2007 - Springer
Background The ability to predict antibody binding sites (aka antigenic determinants or B-cell
epitopes) for a given protein is a precursor to new vaccine design and diagnostics. Among …
epitopes) for a given protein is a precursor to new vaccine design and diagnostics. Among …