User profiles for J. Severin

Jessica Severin

RIKEN
Verified email at gsc.riken.jp
Cited by 21014

A conditional knockout resource for the genome-wide study of mouse gene function

…, J Harrow, T Cox, D Jackson, J Severin, P Biggs, J Fu… - Nature, 2011 - nature.com
Gene targeting in embryonic stem cells has become the principal technology for manipulation
of the mouse genome, offering unrivalled accuracy in allele design and access to …

EnsemblCompara GeneTrees: Complete, duplication-aware phylogenetic trees in vertebrates

AJ Vilella, J Severin, A Ureta-Vidal, L Heng… - Genome …, 2009 - genome.cshlp.org
We have developed a comprehensive gene orientated phylogenetic resource, EnsemblCompara
GeneTrees, based on a computational pipeline to handle clustering, multiple alignment…

Genomic analysis of diversity, population structure, virulence, and antimicrobial resistance in Klebsiella pneumoniae, an urgent threat to public health

…, J Severin, S Brisse, H Cao, J Wilksch… - Proceedings of the …, 2015 - National Acad Sciences
Klebsiella pneumoniae is now recognized as an urgent threat to human health because of
the emergence of multidrug-resistant strains associated with hospital outbreaks and …

An atlas of human long non-coding RNAs with accurate 5′ ends

…, E Denisenko, S Schmeier, TM Poulsen, J Severin… - Nature, 2017 - nature.com
Long non-coding RNAs (lncRNAs) are largely heterogeneous and functionally uncharacterized.
Here, using FANTOM5 cap analysis of gene expression (CAGE) data, we integrate …

Ensembl 2007

…, D Rios, M Schuster, I Sealy, J Severin… - Nucleic acids …, 2007 - academic.oup.com
The Ensembl ( ) project provides a comprehensive and integrated source of annotation of
chordate genome sequences. Over the past year the number of genomes available from …

A systematic review and meta-analyses show that carbapenem use and medical devices are the leading risk factors for carbapenem-resistant Pseudomonas …

AF Voor in 't holt, JA Severin… - Antimicrobial agents …, 2014 - Am Soc Microbiol
A systematic review and meta-analyses were performed to identify the risk factors associated
with carbapenem-resistant Pseudomonas aeruginosa and to identify sources and …

[HTML][HTML] Gateways to the FANTOM5 promoter level mammalian expression atlas

M Lizio, J Harshbarger, H Shimoji, J Severin… - Genome biology, 2015 - Springer
The FANTOM5 project investigates transcription initiation activities in more than 1,000 human
and mouse primary cells, cell lines and tissues using CAGE. Based on manual curation of …

Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells

…, S Nagao-Sato, J Severin, MJL de Hoon, J Kawai… - Science, 2015 - science.org
Although it is generally accepted that cellular differentiation requires changes to transcriptional
networks, dynamic regulation of promoters and enhancers at specific sets of genes has …

An integrated expression atlas of miRNAs and their promoters in human and mouse

…, F Roudnicky, P Sætrom, H Sato, J Severin… - Nature …, 2017 - nature.com
MicroRNAs (miRNAs) are short non-coding RNAs with key roles in cellular regulation. As part
of the fifth edition of the Functional Annotation of Mammalian Genome (FANTOM5) project, …

Discovery of potent nonpeptide inhibitors of stromelysin using SAR by NMR

…, GM Carrera, PA Marcotte, J Severin… - Journal of the …, 1997 - ACS Publications
With the use of an NMR-based method, potent (IC 50 < 25 nM) nonpeptide inhibitors of the
matrix metalloproteinase stromelysin (MMP-3) were discovered. The method, called SAR by …