User profiles for J. Vant

John Vant

Postdoctoral Research Associate, Oak Ridge National Lab
Verified email at ornl.gov
Cited by 376

ChAdOx1 interacts with CAR and PF4 with implications for thrombosis with thrombocytopenia syndrome

…, CK Chan, E Bates, K Waraich, J Vant… - Science …, 2021 - science.org
Vaccines derived from chimpanzee adenovirus Y25 (ChAdOx1), human adenovirus type 26
(HAdV-D26), and human adenovirus type 5 (HAdV-C5) are critical in combatting the severe …

[PDF][PDF] Atoms to phenotypes: molecular design principles of cellular energy metabolism

…, M Sener, U Kleinekathöfer, JW Vant, J Nguyen… - Cell, 2019 - cell.com
We report a 100-million atom-scale model of an entire cell organelle, a photosynthetic
chromatophore vesicle from a purple bacterium, that reveals the cascade of energy conversion …

Exploring cryo-electron microscopy with molecular dynamics

JW Vant, D Sarkar, J Nguyen, AT Baker… - Biochemical Society …, 2022 - portlandpress.com
Single particle analysis cryo-electron microscopy (EM) and molecular dynamics (MD) have
been complimentary methods since cryo-EM was first applied to the field of structural biology. …

Breast cancer metastasis: markers and models

B Weigelt, JL Peterse, LJ Van't Veer - Nature reviews cancer, 2005 - nature.com
Breast cancer starts as a local disease, but it can metastasize to the lymph nodes and distant
organs. At primary diagnosis, prognostic markers are used to assess whether the transition …

[PDF][PDF] CryoFold: Determining protein structures and data-guided ensembles from cryo-EM density maps

…, G Debussche, NJ Sisco, J Nguyen, A Mondal, J Vant… - Matter, 2021 - cell.com
Cryoelectron microscopy requires molecular modeling for refinement of structures. Ensemble
models arrive at low free-energy molecular structures, but are computationally expensive …

Nitric oxide and bone

RJ Van'T Hof, SH Ralston - Immunology, 2001 - Wiley Online Library
Nitric oxide (NO) is a free radical which has important effects on bone cell function. The
endothelial isoform of nitric oxide synthase (eNOS) is widely expressed in bone on a constitutive …

Flexible fitting of small molecules into electron microscopy maps using molecular dynamics simulations with neural network potentials

JW Vant, SLJ Lahey, K Jana, M Shekhar… - Journal of chemical …, 2020 - ACS Publications
Despite significant advances in resolution, the potential for cryo-electron microscopy (EM) to
be used in determining the structures of protein–drug complexes remains unrealized. …

Gene expression profiling predicts clinical outcome of breast cancer

LJ Van't Veer, H Dai, MJ Van De Vijver, YD He… - nature, 2002 - nature.com
Breast cancer patients with the same stage of disease can have markedly different treatment
responses and overall outcome. The strongest predictors for metastases (for example, …

[HTML][HTML] A gene-expression signature as a predictor of survival in breast cancer

MJ Van De Vijver, YD He, LJ Van't Veer… - … England Journal of …, 2002 - Mass Medical Soc
Background A more accurate means of prognostication in breast cancer will improve the
selection of patients for adjuvant systemic therapy. Methods Using microarray analysis to …

[PDF][PDF] Multiplatform analysis of 12 cancer types reveals molecular classification within and across tissues of origin

…, H Shen, L Omberg, A Chu, AA Margolin, LJ Van't Veer… - Cell, 2014 - cell.com
Recent genomic analyses of pathologically defined tumor types identify "within-a-tissue"
disease subtypes. However, the extent to which genomic signatures are shared across tissues …