Motivation Identification of genomic, molecular and clinical markers prognostic of patient
survival is important for developing personalized disease prevention, diagnostic and treatment …

Motivation Combining multiple layers of information underlying biological complexity into a
structured framework represent a challenge in systems biology. A key task is the formalization …

The aquaculture industry has been dealing with salmon lice problems forming serious threats
to salmonid farming. Several treatment approaches have been used to control the parasite…

… To make f OR - NOT False , we assign the m activators as False and then we investigate
which logical assignments of the inhibitors { y j } j = 1 k make the last DNF term also False . Out …

Molecular causal interactions are defined as regulatory connections between biological
components. They are commonly retrieved from biological experiments and can be used for …

Treatment with combinations of drugs carries great promise for personalized therapy for a
variety of diseases. We have previously shown that synergistic combinations of cancer …

The identification of genomic, molecular and clinical markers predictive of patient survival is
important for developing personalized disease prevention, diagnostic and treatment …

We present a set of software packages that provide uniform access to diverse biological
vocabulary resources that are instrumental for current biocuration efforts and tools. The Unified …

VSM is a recently introduced method for entering and displaying any type of knowledge, in a
form that is both semantically precise for computation and intuitive for human understanding…

… reference manual in the package website (Zobolas, 2020c). Several analyses using the
emba R package are available in a separate repository (Zobolas, 2020d). Future developments …