[HTML][HTML] Genetic architecture of artemisinin-resistant Plasmodium falciparum

…, R Amato, EA Ashley, B MacInnis, J Almagro-Garcia… - Nature …, 2015 - nature.com
We report a large multicenter genome-wide association study of Plasmodium falciparum
resistance to artemisinin, the frontline antimalarial drug. Across 15 locations in Southeast Asia, …

Multiple populations of artemisinin-resistant Plasmodium falciparum in Cambodia

O Miotto, J Almagro-Garcia, M Manske, B MacInnis… - Nature …, 2013 - nature.com
We describe an analysis of genome variation in 825 P. falciparum samples from Asia and
Africa that identifies an unusual pattern of parasite population structure at the epicenter of …

[HTML][HTML] Analysis of Plasmodium falciparum diversity in natural infections by deep sequencing

…, O Miotto, S Campino, S Auburn, J Almagro-Garcia… - Nature, 2012 - nature.com
Malaria elimination strategies require surveillance of the parasite population for genetic
changes that demand a public health response, such as new forms of drug resistance 1 , 2 . …

[HTML][HTML] Genetic markers associated with dihydroartemisinin–piperaquine failure in Plasmodium falciparum malaria in Cambodia: a genotype–phenotype association …

…, D Dek, RD Pearson, J Almagro-Garcia… - The Lancet Infectious …, 2017 - thelancet.com
Background As the prevalence of artemisinin-resistant Plasmodium falciparum malaria
increases in the Greater Mekong subregion, emerging resistance to partner drugs in artemisinin …

[HTML][HTML] Origins of the current outbreak of multidrug-resistant malaria in southeast Asia: a retrospective genetic study

R Amato, RD Pearson, J Almagro-Garcia… - The Lancet Infectious …, 2018 - thelancet.com
Background Antimalarial resistance is rapidly spreading across parts of southeast Asia where
dihydroartemisinin–piperaquine is used as first-line treatment for Plasmodium falciparum …

Genomic analysis of local variation and recent evolution in Plasmodium vivax

…, R Amato, S Auburn, O Miotto, J Almagro-Garcia… - Nature …, 2016 - nature.com
The widespread distribution and relapsing nature of Plasmodium vivax infection present
major challenges for the elimination of malaria. To characterize the genetic diversity of this …

treespace: Statistical exploration of landscapes of phylogenetic trees

…, M Kendall, J AlmagroGarcia… - Molecular ecology …, 2017 - Wiley Online Library
The increasing availability of large genomic data sets as well as the advent of Bayesian
phylogenetics facilitates the investigation of phylogenetic incongruence, which can result in the …

[HTML][HTML] An open dataset of Plasmodium falciparum genome variation in 7,000 worldwide samples

A Ahouidi, M Ali, J Almagro-Garcia… - Wellcome Open …, 2021 - ncbi.nlm.nih.gov
A major obstacle to malaria elimination is the great capacity of the parasite and vector
populations to evolve in response to malaria control interventions. The widespread use of …

Genetic surveillance in the Greater Mekong subregion and South Asia to support malaria control and elimination

CG Jacob, N Thuy-Nhien, M Mayxay, RJ Maude… - Elife, 2021 - elifesciences.org
Background: National Malaria Control Programmes (NMCPs) currently make limited use of
parasite genetic data. We have developed GenRe-Mekong, a platform for genetic …

[HTML][HTML] Pf7: an open dataset of Plasmodium falciparum genome variation in 20,000 worldwide samples

…, A Ahouidi, M Ali, J Almagro-Garcia… - Wellcome open …, 2023 - ncbi.nlm.nih.gov
We describe the MalariaGEN Pf7 data resource, the seventh release of Plasmodium falciparum
genome variation data from the MalariaGEN network. It comprises over 20,000 samples …