User profiles for Jakub Wlodarczyk

Jakub Wlodarczyk

Nencki Institute
Verified email at nencki.edu.pl
Cited by 4459

[PDF][PDF] CTCF-mediated human 3D genome architecture reveals chromatin topology for transcription

…, P Szalaj, P Trzaskoma, A Magalska, J Wlodarczyk… - Cell, 2015 - cell.com
Spatial genome organization and its effect on transcription remains a fundamental question.
We applied an advanced chromatin interaction analysis by paired-end tag sequencing (ChIA…

Chronic unpredictable mild stress for modeling depression in rodents: Meta-analysis of model reliability

…, M Bijata, E Ponimaskin, J Wlodarczyk - … & Biobehavioral Reviews, 2019 - Elsevier
Depression is currently among the top five leading causes of the global burden of disease.
Chronic unpredictable mild stress (CUMS) is currently the most commonly used, reliable, and …

[HTML][HTML] Cellular senescence in brain aging

…, G Mosieniak, M Wesierska, J Wlodarczyk - Frontiers in aging …, 2021 - frontiersin.org
Aging of the brain can manifest itself as a memory and cognitive decline, which has been
shown to frequently coincide with changes in the structural plasticity of dendritic spines. …

Influence of matrix metalloproteinase MMP-9 on dendritic spine morphology

…, MG Stewart, L Kaczmarek, J Wlodarczyk - Journal of cell …, 2011 - journals.biologists.com
An increasing body of data has shown that matrix metalloproteinase-9 (MMP-9), an extracellularly
acting, Zn 2+ -dependent endopeptidase, is important not only for pathologies of the …

Extracellular matrix molecules, their receptors, and secreted proteases in synaptic plasticity

J Wlodarczyk, I Mukhina, L Kaczmarek… - Developmental …, 2011 - Wiley Online Library
Neural cells secrete diverse molecules, which accumulate in the extracellular space and
form the extracellular matrix (ECM). Interactions between cells and the ECM are well …

[PDF][PDF] Analysis of FRET signals in the presence of free donors and acceptors

J Wlodarczyk, A Woehler, F Kobe, E Ponimaskin… - Biophysical journal, 2008 - cell.com
A method for spectral analysis of Förster resonance energy transfer (FRET) signals is
presented, taking into consideration both the contributions of unpaired donor and acceptor …

[PDF][PDF] Synaptic remodeling depends on signaling between serotonin receptors and the extracellular matrix

…, DA Rusakov, A Dityatev, G Wilczyński, J Wlodarczyk… - Cell Reports, 2017 - cell.com
Rewiring of synaptic circuitry pertinent to memory formation has been associated with
morphological changes in dendritic spines and with extracellular matrix (ECM) remodeling. Here, …

MMP9: a novel function in synaptic plasticity

M Dziembowska, J Wlodarczyk - The international journal of biochemistry & …, 2012 - Elsevier
Matrix metalloproteinase-9 (MMP-9), an extracellularly acting, Zn 2+ -dependent
endopeptidase is a subject to complex regulation at the level of transcription, mRNA dendritic …

A comparative study of three-dimensional printing directions: The degradation and toxicological profile of a PLA/PHA blend

…, M Musioł, W Sikorska, M Sobota, J Włodarczyk… - … degradation and stability, 2018 - Elsevier
The use of biobased plastics is of great importance for many applications. Blending thermoplastic
polylactide (PLA) with polyhydroxyalkanoate (PHA) enables the formulation of a more …

[HTML][HTML] Matrix metalloproteinase-9 involvement in the structural plasticity of dendritic spines

M Stawarski, M Stefaniuk, J Wlodarczyk - Frontiers in neuroanatomy, 2014 - frontiersin.org
… Marzena Stefaniuk, Michal Stawarski and Jakub Wlodarczyk drafted and critically revised
the manuscript. Jakub Wlodarczyk contributed to the general conception of the work and …