Rapid Degradation of Caenorhabditis elegans Proteins at Single-Cell Resolution with a Synthetic Auxin

…, TN Medwig-Kinney, G Ashley, JM Ragle… - G3: Genes …, 2020 - academic.oup.com
As developmental biologists in the age of genome editing, we now have access to an ever-increasing
array of tools to manipulate endogenous gene expression. The auxin-inducible …

[HTML][HTML] IscR Is Essential for Yersinia pseudotuberculosis Type III Secretion and Virulence

…, DL Bernick, E Mettert, HA Ramirez, JM Ragle… - PLoS …, 2014 - journals.plos.org
Type III secretion systems (T3SS) are essential for virulence in dozens of pathogens, but are
not required for growth outside the host. Therefore, the T3SS of many bacterial species are …

A water-soluble, synthetic auxin analog for rapid degradation of target proteins during C. elegans development

MA Martinez, BA Kinney, G Ashley, JM Ragle… - bioRxiv, 2019 - biorxiv.org
As developmental biologists in the age of genome editing, we now have access to an ever-increasing
array of tools to manipulate endogenous gene expression. By combining CRISPR/…

[PDF][PDF] Proteins at Single-Cell Resolution with a Synthetic Auxin

…, BA Kinney, TN Medwig-Kinney, G Ashley, JM Ragle… - 2020 - you.stonybrook.edu
As developmental biologists in the age of genome editing, we now have access to an
everincreasing array of tools to manipulate endogenous gene expression. The auxin-inducible …

[HTML][HTML] A spontaneous TIR1 loss-of-function allele in C. elegans

KM Myles, AA Vo, JM Ragle, JD Ward - Micropublication Biology, 2023 - ncbi.nlm.nih.gov
The auxin-inducible degron (AID) system is a widely-used system for conditional protein
depletion. During the course of an experiment, we depleted the nuclear hormone receptor …

The conserved molting/circadian rhythm regulator NHR-23/NR1F1 serves as an essential co-regulator of C. elegans spermatogenesis

JM Ragle, AL Aita, KN Morrison… - …, 2020 - journals.biologists.com
In sexually reproducing metazoans, spermatogenesis is the process by which uncommitted
germ cells give rise to haploid sperm. Work in model systems has revealed mechanisms …

An expanded auxin-inducible degron toolkit for Caenorhabditis elegans

…, BR Davidson, W Zhang, JM Ragle… - Genetics, 2021 - academic.oup.com
The auxin-inducible degron (AID) system has emerged as a powerful tool to conditionally
deplete proteins in a range of organisms and cell types. Here, we describe a toolkit to augment …

NHR-23 and SPE-44 regulate distinct sets of genes during Caenorhabditis elegans spermatogenesis

JM Ragle, KN Morrison, AA Vo, ZE Johnson… - G3, 2022 - academic.oup.com
Spermatogenesis is the process through which mature male gametes are formed and is
necessary for the transmission of genetic information. While much work has established how …

Coordinated tissue-specific regulation of adjacent alternative 3′ splice sites in C. elegans

JM Ragle, S Katzman, TF Akers… - Genome …, 2015 - genome.cshlp.org
Adjacent alternative 3′ splice sites, those separated by ≤18 nucleotides, provide a unique
problem in the study of alternative splicing regulation; there is overlap of the cis-elements …

Experimental considerations for study of C. elegans lysosomal proteins

…, KM Myles, MT Levenson, JM Ragle… - G3: Genes …, 2023 - academic.oup.com
Lysosomes are an important organelle required for the degradation of a range of cellular
components. Lysosome function is critical for development and homeostasis as dysfunction can …