User profiles for Jan Hoinka
Jan HoinkaNational Center of Biotechnology Information, National Library of Medicine, NIH, Bethesda … Verified email at nih.gov Cited by 785 |
Large scale analysis of the mutational landscape in HT-SELEX improves aptamer discovery
High-Throughput (HT) SELEX combines SELEX (Systematic Evolution of Ligands by
EXponential Enrichment), a method for aptamer discovery, with massively parallel sequencing …
EXponential Enrichment), a method for aptamer discovery, with massively parallel sequencing …
Identification of sequence–structure RNA binding motifs for SELEX-derived aptamers
Motivation: Systematic Evolution of Ligands by EXponential Enrichment (SELEX) represents
a state-of-the-art technology to isolate single-stranded (ribo)nucleic acid fragments, named …
a state-of-the-art technology to isolate single-stranded (ribo)nucleic acid fragments, named …
Aptacluster–a method to cluster ht-selex aptamer pools and lessons from its application
Systematic Evolution of Ligands by EXponential Enrichment (SELEX) is a well established
experimental procedure to identify aptamers - synthetic single-stranded (ribo)nucleic …
experimental procedure to identify aptamers - synthetic single-stranded (ribo)nucleic …
Identifying high-affinity aptamer ligands with defined cross-reactivity using high-throughput guided systematic evolution of ligands by exponential enrichment
Oligonucleotide aptamers represent a novel platform for creating ligands with desired
specificity, and they offer many potentially significant advantages over monoclonal antibodies in …
specificity, and they offer many potentially significant advantages over monoclonal antibodies in …
[HTML][HTML] AptaSUITE: a full-featured bioinformatics framework for the comprehensive analysis of aptamers from HT-SELEX experiments
The capability of producing and efficiently processing big data has revolutionized virtually
every field of science and technology and has enabled the analysis of experimental results at …
every field of science and technology and has enabled the analysis of experimental results at …
[PDF][PDF] AptaTRACE elucidates RNA sequence-structure motifs from selection trends in HT-SELEX experiments
Aptamers, short RNA or DNA molecules that bind distinct targets with high affinity and specificity,
can be identified using high-throughput systematic evolution of ligands by exponential …
can be identified using high-throughput systematic evolution of ligands by exponential …
Highly Constrained Bicyclic Scaffolds for the Discovery of Protease-Stable Peptides via mRNA Display
Highly constrained peptides such as the knotted peptide natural products are promising
medicinal agents because of their impressive biostability and potent activity. Yet, libraries of …
medicinal agents because of their impressive biostability and potent activity. Yet, libraries of …
[HTML][HTML] A 2′ FY-RNA motif defines an aptamer for Ebolavirus secreted protein
With properties such as stability to long-term storage and amenability to repetitive use, nucleic
acid aptamers are compatible with many sensing/transducing platforms intended for use …
acid aptamers are compatible with many sensing/transducing platforms intended for use …
Direct, competitive comparison of linear, monocyclic, and bicyclic libraries using mRNA display
DE Hacker, NA Abrigo, J Hoinka… - ACS Combinatorial …, 2020 - ACS Publications
Peptide macrocyclization is typically associated with the development of higher affinity and
more protease stable protein ligands, and, as such, is an important tool in peptide drug …
more protease stable protein ligands, and, as such, is an important tool in peptide drug …
[HTML][HTML] Immunotherapy using IgE or CAR T cells for cancers expressing the tumor antigen SLC3A2
…, A Di Meo, S Mele, G Chiaruttini, J Hoinka… - … for ImmunoTherapy of …, 2021 - ncbi.nlm.nih.gov
Background Cancer immunotherapy with monoclonal antibodies and chimeric antigen receptor
(CAR) T cell therapies can benefit from selection of new targets with high levels of tumor …
(CAR) T cell therapies can benefit from selection of new targets with high levels of tumor …