User profiles for Jay F. Sarthy
Jay SarthyActing Assistant Professor, University of Washington and Research Associate, Fred … Verified email at fredhutch.org Cited by 833 |
Single-cell CUT&Tag analysis of chromatin modifications in differentiation and tumor progression
Methods for quantifying gene expression 1 and chromatin accessibility 2 in single cells are
well established, but single-cell analysis of chromatin regions with specific histone …
well established, but single-cell analysis of chromatin regions with specific histone …
[HTML][HTML] MYCN amplification and ATRX mutations are incompatible in neuroblastoma
Aggressive cancers often have activating mutations in growth-controlling oncogenes and
inactivating mutations in tumor-suppressor genes. In neuroblastoma, amplification of the …
inactivating mutations in tumor-suppressor genes. In neuroblastoma, amplification of the …
[HTML][HTML] Automated CUT&Tag profiling of chromatin heterogeneity in mixed-lineage leukemia
…, SJ Wu, E Babaeva, S Meshinchi, JF Sarthy… - Nature …, 2021 - nature.com
Acute myeloid and lymphoid leukemias often harbor chromosomal translocations involving
the KMT2A gene, encoding the KMT2A lysine methyltransferase (also known as mixed-…
the KMT2A gene, encoding the KMT2A lysine methyltransferase (also known as mixed-…
Histone deposition pathways determine the chromatin landscapes of H3. 1 and H3. 3 K27M oncohistones
Lysine 27-to-methionine (K27M) mutations in the H3.1 or H3.3 histone genes are characteristic
of pediatric diffuse midline gliomas (DMGs). These oncohistone mutations dominantly …
of pediatric diffuse midline gliomas (DMGs). These oncohistone mutations dominantly …
[HTML][HTML] Automated in situ chromatin profiling efficiently resolves cell types and gene regulatory programs
Background Our understanding of eukaryotic gene regulation is limited by the complexity of
protein–DNA interactions that comprise the chromatin landscape and by inefficient methods …
protein–DNA interactions that comprise the chromatin landscape and by inefficient methods …
Nucleosome patterns in circulating tumor DNA reveal transcriptional regulation of advanced prostate cancer phenotypes
This study provides insights into the dynamics of nucleosome positioning and gene regulation
associated with cancer phenotypes that can be ascertained from ctDNA. New methods for …
associated with cancer phenotypes that can be ascertained from ctDNA. New methods for …
[PDF][PDF] Signaling via a CD27-TRAF2-SHP-1 axis during naive T cell activation promotes memory-associated gene regulatory networks
The interaction of the tumor necrosis factor receptor (TNFR) family member CD27 on naive
CD8 + T (Tn) cells with homotrimeric CD70 on antigen-presenting cells (APCs) is necessary …
CD8 + T (Tn) cells with homotrimeric CD70 on antigen-presenting cells (APCs) is necessary …
[HTML][HTML] Response to pembrolizumab in a patient with xeroderma pigmentosum and advanced squamous cell carcinoma
Xeroderma pigmentosum (XP) is a rare autosomal recessive disorder caused by a nucleotide
excision repair deficit, resulting in sensitivity to UV radiation. 1 Individuals with XP are …
excision repair deficit, resulting in sensitivity to UV radiation. 1 Individuals with XP are …
EWS:: FLI1 and HOXD13 control tumor cell plasticity in Ewing sarcoma
Purpose: Propagation of Ewing sarcoma requires precise regulation of EWS::FLI1
transcriptional activity. Determining the mechanisms of fusion regulation will advance our …
transcriptional activity. Determining the mechanisms of fusion regulation will advance our …
Chromatin bottlenecks in cancer
Cancer accounts for ∼9 million deaths per year worldwide, predominantly affecting adults.
Adult malignancies are usually examined after extensive clonal evolution and carry many …
Adult malignancies are usually examined after extensive clonal evolution and carry many …