[HTML][HTML] Three-dimensional structure determination of protein complexes using matrix-landing mass spectrometry

MS Westphall, KW Lee, AZ Salome, JM Lodge… - Nature …, 2022 - nature.com
Native mass spectrometry (MS) is increasingly used to provide complementary data to electron
microscopy (EM) for protein structure characterization. Beyond the ability to provide mass …

[PDF][PDF] Mapping physiological ADP-ribosylation using activated ion electron transfer dissociation

SC Buch-Larsen, IA Hendriks, JM Lodge, M Rykær… - Cell reports, 2020 - cell.com
ADP-ribosylation (ADPr) is a post-translational modification that plays pivotal roles in a wide
range of cellular processes. Mass spectrometry (MS)-based analysis of ADPr under …

Top-down characterization of an intact monoclonal antibody using activated ion electron transfer dissociation

JM Lodge, KL Schauer, DR Brademan… - Analytical …, 2020 - ACS Publications
Monoclonal antibodies (mAbs) are important therapeutic glycoproteins, but their large size
and structural complexity make them difficult to rapidly characterize. Top-down mass …

Optical fiber-enabled photoactivation of peptides and proteins

…, KL Schauer, NM Riley, JM Lodge… - Analytical …, 2020 - ACS Publications
Photoactivation and photodissociation have long proven to be useful tools in tandem mass
spectrometry, but implementation often involves cumbersome and potentially dangerous …

FP tethering: a screening technique to rapidly identify compounds that disrupt protein–protein interactions

JM Lodge, TJ Rettenmaier, JA Wells… - …, 2014 - pubs.rsc.org
Tethering is a screening technique for discovering small-molecule fragments that bind to pre-determined
sites via formation of a disulphide bond. Tethering screens traditionally rely …

Dissecting allosteric effects of activator–coactivator complexes using a covalent small molecule ligand

N Wang, JM Lodge, CA Fierke… - Proceedings of the …, 2014 - National Acad Sciences
Allosteric binding events play a critical role in the formation and stability of transcriptional
activator–coactivator complexes, perhaps in part due to the often intrinsically disordered nature …

Capillary zone electrophoresis-tandem mass spectrometry with activated ion electron transfer dissociation for large-scale top-down proteomics

EN McCool, JM Lodge, AR Basharat, X Liu… - Journal of the …, 2019 - ACS Publications
Capillary zone electrophoresis (CZE)-tandem mass spectrometry (MS/MS) has been
recognized as an efficient approach for top-down proteomics recently for its high-capacity …

Collision-induced unfolding reveals unique fingerprints for remote protein interaction sites in the KIX regulation domain

JN Rabuck-Gibbons, JM Lodge, AK Mapp… - Journal of The …, 2018 - ACS Publications
The kinase-inducible domain (KIX) of the transcriptional coactivator CBP binds multiple
transcriptional regulators through two allosterically connected sites. Establishing a method for …

Covalent chemical cochaperones of the p300/CBP GACKIX domain

JM Lodge, CY Majmudar, J Clayton, AK Mapp - ChemBioChem, 2018 - Wiley Online Library
The GACKIX activator binding domain has been a compelling target for small‐molecule probe
discovery because of the central role of activator–GACKIX complexes in diseases ranging …

The new higher level classification of eukaryotes with emphasis on the taxonomy of protists

…, J Krug, CE Lane, LA Lewis, J Lodge… - Journal of Eukaryotic …, 2005 - Wiley Online Library
This revision of the classification of unicellular eukaryotes updates that of Levine et al. (1980)
for the protozoa and expands it to include other protists. Whereas the previous revision …