User profiles for Jean Monlong

Jean Monlong

UC Santa Cruz Genomics Institute, University of California, Santa Cruz
Verified email at mail.mcgill.ca
Cited by 24264

[HTML][HTML] The genotype-tissue expression (GTEx) project

…, ET Dermitzakis, T Lappalainen, R Guigo, J Monlong… - Nature …, 2013 - nature.com
Genome-wide association studies have identified thousands of loci for common diseases,
but, for the majority of these, the mechanisms underlying disease susceptibility remain …

The Genotype-Tissue Expression (GTEx) pilot analysis: multitissue gene regulation in humans

…, H Ongen, MA Rivas, A Battle, S Mostafavi, J Monlong… - Science, 2015 - science.org
Understanding the functional consequences of genetic variation, and how it affects complex
human disease and quantitative traits, remains a critical challenge for biomedicine. We …

Transcriptome and genome sequencing uncovers functional variation in humans

…, M Sammeth, MR Friedländer, PAC 't Hoen, J Monlong… - Nature, 2013 - nature.com
Genome sequencing projects are discovering millions of genetic variants in humans, and
interpretation of their functional effects is essential for understanding the genetic basis of …

The human transcriptome across tissues and individuals

…, PG Ferreira, F Reverter, DS DeLuca, J Monlong… - Science, 2015 - science.org
Transcriptional regulation and posttranscriptional processing underlie many cellular and
organismal phenotypes. We used RNA sequence data generated by Genotype-Tissue …

[HTML][HTML] A draft human pangenome reference

…, M Haukness, G Hickey, S Lu, JK Lucas, J Monlong… - Nature, 2023 - nature.com
Here the Human Pangenome Reference Consortium presents a first draft of the human
pangenome reference. The pangenome contains 47 phased, diploid assemblies from a cohort of …

[HTML][HTML] Nanopore sequencing and the Shasta toolkit enable efficient de novo assembly of eleven human genomes

…, KM Munson, MR Vollger, J Monlong… - Nature …, 2020 - nature.com
De novo assembly of a human genome using nanopore long-read sequences has been
reported, but it used more than 150,000 CPU hours and weeks of wall-clock time. To enable …

Pangenomics enables genotyping of known structural variants in 5202 diverse genomes

J Sirén, J Monlong, X Chang, AM Novak, JM Eizenga… - Science, 2021 - science.org
INTRODUCTION Modern genomics depends on inexpensive short-read sequencing.
Sequenced reads up to a few hundred base pairs in length are computationally mapped to …

Ultrarapid nanopore genome sequencing in a critical care setting

…, E Spiteri, T Pesout, J Monlong… - … England Journal of …, 2022 - Mass Medical Soc
Genetic Diagnoses in Critical Care Because a genetic diagnosis can guide clinical management
and improve prognosis in critically ill patients, much effort has gone into developing …

[PDF][PDF] High rate of recurrent de novo mutations in developmental and epileptic encephalopathies

…, AD Laporte, C Nassif, O Diallo, J Monlong… - The American Journal of …, 2017 - cell.com
Developmental and epileptic encephalopathy (DEE) is a group of conditions characterized
by the co-occurrence of epilepsy and intellectual disability (ID), typically with developmental …

[HTML][HTML] Single-cell RNA-seq reveals that glioblastoma recapitulates a normal neurodevelopmental hierarchy

…, S Ayyadhury, PU Le, J Nadaf, J Monlong… - Nature …, 2020 - nature.com
Cancer stem cells are critical for cancer initiation, development, and treatment resistance.
Our understanding of these processes, and how they relate to glioblastoma heterogeneity, is …