[HTML][HTML] Exome sequencing in multiplex families with left-sided cardiac defects has high yield for disease gene discovery

…, K Myers, T Duong, DJ Corsmeier, JB Gaither… - PLoS …, 2022 - journals.plos.org
Congenital heart disease (CHD) is a common group of birth defects with a strong genetic
contribution to their etiology, but historically the diagnostic yield from exome studies of isolated …

Synonymous variants that disrupt messenger RNA structure are significantly constrained in the human population

JBS Gaither, GE Lammi, JL Li, DM Gordon… - …, 2021 - academic.oup.com
Background The role of synonymous single-nucleotide variants in human health and disease
is poorly understood, yet evidence suggests that this class of “silent” genetic variation …

[HTML][HTML] SNVstory: inferring genetic ancestry from genome sequencing data

AE Bollas, A Rajkovic, D Ceyhan, JB Gaither… - BMC …, 2024 - Springer
Background Genetic ancestry, inferred from genomic data, is a quantifiable biological parameter.
While much of the human genome is identical across populations, it is estimated that as …

Mathematical analysis of a model for glucose regulation

K Fessel, JB Gaither, JK Bower, T Gaillard… - Mathematical …, 2015 - aimsciences.org
Diabetes affects millions of Americans, and the correct identification of individuals afflicted
with this disease, especially of those in early stages or in progression towards diabetes, …

[HTML][HTML] A decade's experience in pediatric chromosomal microarray reveals distinct characteristics across ordering specialties

…, A Antoniou, N Ramesh, M Hu, J Gaither… - The Journal of Molecular …, 2022 - Elsevier
Chromosomal microarray (CMA) is a testing modality frequently used in pediatric patients;
however, published data on its utilization are limited to the genetic setting. We performed a …

Hypothesis tests for phylogenetic quartets, with applications to coalescent-based species tree inference

J Gaither, L Kubatko - Journal of Theoretical Biology, 2016 - Elsevier
Jeff Gaither performed this research while supported under a postdoctoral fellowship from
the National Science Foundation (grant DMS-0931642). Laura Kubatko was also supported …

On the number of 2-protected nodes in tries and suffix trees

J Gaither, Y Homma, M Sellke… - Discrete Mathematics & …, 2012 - dmtcs.episciences.org
We use probabilistic and combinatorial tools on strings to discover the average number of 2-protected
nodes in tries and in suffix trees. Our analysis covers both the uniform and non-…

The variance of the number of 2-protected nodes in a trie

J Gaither, MD Ward - 2013 Proceedings of the Tenth Workshop on Analytic …, 2013 - SIAM
We derive an asymptotic expression for the variance of the number of 2-protected nodes (neither
leaves nor parents of leaves) in a binary trie. In an unbiased trie on n leaves we find, for …

[HTML][HTML] A phylogenetic approach to inferring the order in which mutations arise during cancer progression

Y Gao, J Gaither, J Chifman… - PLOS Computational …, 2022 - journals.plos.org
Although the role of evolutionary process in cancer progression is widely accepted, increasing
attention is being given to the evolutionary mechanisms that can lead to differences in …

SNVstory: A dockerized algorithm for rapid and accurate inference of sub-continental ancestry

AE Bollas, A Rajkovic, D Ceyhan, JB Gaither… - bioRxiv, 2023 - biorxiv.org
Knowing a patient's genetic ancestry is crucial in clinical settings, providing benefits such as
tailored genetic testing, targeted health screening based on ancestral disease-…