User profiles for Jeffrey D. Varner
Jeffrey VarnerProfessor of Chemical and Biomolecular Engineering, Cornell University Verified email at cornell.edu Cited by 3729 |
A review of the mammalian unfolded protein response
Proteins requiring post‐translational modifications such as N‐linked glycosylation are
processed in the endoplasmic reticulum (ER). A diverse array of cellular stresses can lead to …
processed in the endoplasmic reticulum (ER). A diverse array of cellular stresses can lead to …
Engineering the spatial organization of metabolic enzymes: mimicking nature's synergy
A growing body of evidence indicates that many cellular reactions within metabolic pathways
are catalyzed not by free-floating ‘soluble’ enzymes, but via one or more membrane-…
are catalyzed not by free-floating ‘soluble’ enzymes, but via one or more membrane-…
[HTML][HTML] Computationally derived points of fragility of a human cascade are consistent with current therapeutic strategies
D Luan, M Zai, JD Varner - PLoS computational biology, 2007 - journals.plos.org
The role that mechanistic mathematical modeling and systems biology will play in molecular
medicine and clinical development remains uncertain. In this study, mathematical modeling …
medicine and clinical development remains uncertain. In this study, mathematical modeling …
[HTML][HTML] Ubiquibodies, synthetic E3 ubiquitin ligases endowed with unnatural substrate specificity for targeted protein silencing
AD Portnoff, EA Stephens, JD Varner… - Journal of Biological …, 2014 - ASBMB
The ubiquitin-proteasome pathway (UPP) is the main route of protein degradation in
eukaryotic cells and is a common mechanism through which numerous cellular pathways are …
eukaryotic cells and is a common mechanism through which numerous cellular pathways are …
Physicochemical regulation of endothelial sprouting in a 3D microfluidic angiogenesis model
Both physiological and pathological tissue remodeling (eg, during wound healing and
cancer, respectively) require new blood vessel formation via angiogenesis, but the underlying …
cancer, respectively) require new blood vessel formation via angiogenesis, but the underlying …
Constructing cell-free expression systems for low-cost access
Cell-free systems for gene expression have gained attention as platforms for the facile study
of genetic circuits and as highly effective tools for teaching. Despite recent progress, the …
of genetic circuits and as highly effective tools for teaching. Despite recent progress, the …
[HTML][HTML] An effective model of the retinoic acid induced HL-60 differentiation program
…, KV Rogers, A Sagar, RP Bunaciu, A Yen, JD Varner - Scientific reports, 2017 - nature.com
In this study, we present an effective model All-Trans Retinoic Acid (ATRA)-induced
differentiation of HL-60 cells. The model describes reinforcing feedback between an ATRA-inducible …
differentiation of HL-60 cells. The model describes reinforcing feedback between an ATRA-inducible …
Engineering orthogonal human O-linked glycoprotein biosynthesis in bacteria
A major objective of synthetic glycobiology is to re-engineer existing cellular glycosylation
pathways from the top down or construct non-natural ones from the bottom up for new and …
pathways from the top down or construct non-natural ones from the bottom up for new and …
Generating effective models and parameters for RNA genetic circuits
RNA genetic circuitry is emerging as a powerful tool to control gene expression. However,
little work has been done to create a theoretical foundation for RNA circuit design. A …
little work has been done to create a theoretical foundation for RNA circuit design. A …
Sequence Specific Modeling of E. coli Cell-Free Protein Synthesis
Cell-free protein synthesis (CFPS) is a widely used research tool in systems and synthetic
biology. However, if CFPS is to become a mainstream technology for applications such as …
biology. However, if CFPS is to become a mainstream technology for applications such as …