User profiles for Jeffrey M Yunes
Jeffrey Michael YunesIndependent Verified email at yunesaging.org Cited by 2509 |
[HTML][HTML] A large-scale evaluation of computational protein function prediction
Automated annotation of protein function is challenging. As the number of sequenced
genomes rapidly grows, the overwhelming majority of protein products can only be annotated …
genomes rapidly grows, the overwhelming majority of protein products can only be annotated …
[HTML][HTML] GOATOOLS: A Python library for Gene Ontology analyses
The biological interpretation of gene lists with interesting shared properties, such as up-or
down-regulation in a particular experiment, is typically accomplished using gene ontology …
down-regulation in a particular experiment, is typically accomplished using gene ontology …
[HTML][HTML] The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens
Background The Critical Assessment of Functional Annotation (CAFA) is an ongoing, global,
community-driven effort to evaluate and improve the computational annotation of protein …
community-driven effort to evaluate and improve the computational annotation of protein …
The structure–function linkage database
The Structure–Function Linkage Database (SFLD, http://sfld.rbvi.ucsf.edu/ ) is a manually
curated classification resource describing structure–function relationships for functionally …
curated classification resource describing structure–function relationships for functionally …
Effusion: prediction of protein function from sequence similarity networks
JM Yunes, PC Babbitt - Bioinformatics, 2019 - academic.oup.com
Motivation Critical evaluation of methods for protein function prediction shows that data
integration improves the performance of methods that predict protein function, but a basic BLAST-…
integration improves the performance of methods that predict protein function, but a basic BLAST-…
[PDF][PDF] Automating Genomic Context Analysis with a Probabilistic Model of Protein Function and Relatedness
JM Yunes, PC Babbitt - biofunctionprediction.org
Prediction of protein function continues to be an active area of research. While the performance
of automated function prediction methods continues to improve, assessments of their …
of automated function prediction methods continues to improve, assessments of their …
Factors associated with death in critically ill patients with coronavirus disease 2019 in the US
Importance The US is currently an epicenter of the coronavirus disease 2019 (COVID-19)
pandemic, yet few national data are available on patient characteristics, treatment, and …
pandemic, yet few national data are available on patient characteristics, treatment, and …
Association between early treatment with tocilizumab and mortality among critically ill patients with COVID-19
Importance Therapies that improve survival in critically ill patients with coronavirus disease
2019 (COVID-19) are needed. Tocilizumab, a monoclonal antibody against the interleukin 6 …
2019 (COVID-19) are needed. Tocilizumab, a monoclonal antibody against the interleukin 6 …
Kidney recovery and death in critically ill patients with COVID-19–associated acute kidney injury treated with dialysis: the STOP-COVID cohort study
… m 2 , respectively, compared with eGFR > 60 mL/min/1.73 m 2 . Oliguria at the time of KRT
initiation was also associated with nonrecovery (ORs of 2.10 [95% CI, 1.14-3.88] and 4.02 [95…
initiation was also associated with nonrecovery (ORs of 2.10 [95% CI, 1.14-3.88] and 4.02 [95…
ACR Appropriateness Criteria® Pre-Irradiation Evaluation and Management of Brain Metastases
…, AD Vassil, FJ Wippold, MJ Yunes… - Journal of palliative …, 2014 - liebertpub.com
Pretreatment evaluation is performed to determine the number, location, and size of the
brain metastases and magnetic resonance imaging (MRI) is the recommended imaging …
brain metastases and magnetic resonance imaging (MRI) is the recommended imaging …