Single-cell transcriptomics reveals bimodality in expression and splicing in immune cells

…, R Satija, X Adiconis, RS Gertner, JT Gaublomme… - Nature, 2013 - nature.com
Recent molecular studies have shown that, even when derived from a seemingly homogenous
population, individual cells can exhibit substantial differences in gene expression, protein …

Single-cell RNA-seq reveals dynamic paracrine control of cellular variation

…, D Gennert, D Lu, P Chen, RS Gertner, JT Gaublomme… - Nature, 2014 - nature.com
High-throughput single-cell transcriptomics offers an unbiased approach for understanding
the extent, basis and function of gene expression variation between seemingly identical cells…

A roadmap for the human gut cell atlas

…, LA Coburn, JT Gaublomme… - Nature Reviews …, 2023 - nature.com
The number of studies investigating the human gastrointestinal tract using various single-cell
profiling methods has increased substantially in the past few years. Although this increase …

Dynamic regulatory network controlling TH17 cell differentiation

N Yosef, AK Shalek, JT Gaublomme, H Jin, Y Lee… - Nature, 2013 - nature.com
Despite their importance, the molecular circuits that control the differentiation of naive T
cells remain largely unknown. Recent studies that reconstructed regulatory networks in …

[HTML][HTML] Single-cell genomics unveils critical regulators of Th17 cell pathogenicity

JT Gaublomme, N Yosef, Y Lee, RS Gertner, LV Yang… - Cell, 2015 - cell.com
Extensive cellular heterogeneity exists within specific immune-cell subtypes classified as a
single lineage, but its molecular underpinnings are rarely characterized at a genomic scale. …

Nanowire-mediated delivery enables functional interrogation of primary immune cells: application to the analysis of chronic lymphocytic leukemia

AK Shalek, JT Gaublomme, L Wang, N Yosef… - Nano …, 2012 - ACS Publications
A circuit level understanding of immune cells and hematological cancers has been severely
impeded by a lack of techniques that enable intracellular perturbation without significantly …

[HTML][HTML] Nuclei multiplexing with barcoded antibodies for single-nucleus genomics

JT Gaublomme, B Li, C McCabe, A Knecht… - Nature …, 2019 - nature.com
Single-nucleus RNA-seq (snRNA-seq) enables the interrogation of cellular states in complex
tissues that are challenging to dissociate or are frozen, and opens the way to human …

Probing enzymatic activity inside living cells using a nanowire–cell “sandwich” assay

YR Na, SY Kim, JT Gaublomme, AK Shalek… - Nano …, 2013 - ACS Publications
Developing a detailed understanding of enzyme function in the context of an intracellular
signal transduction pathway requires minimally invasive methods for probing enzyme activity in …

Somatic mutation as a mechanism of Wnt/β-catenin pathway activation in CLL

…, M Lawrence, R Ding, JT Gaublomme… - Blood, The Journal …, 2014 - ashpublications.org
One major goal of cancer genome sequencing is to identify key genes and pathways that
drive tumor pathogenesis. Although many studies have identified candidate driver genes …

[HTML][HTML] Identification and characterization of latency-associated peptide-expressing γδ T cells

…, N Pinheiro-Rosa, RP Oliveira, JT Gaublomme… - Nature …, 2015 - nature.com
γδ T cells are a subset of lymphocytes specialized in protecting the host against pathogens
and tumours. Here we describe a subset of regulatory γδ T cells that express the latency-…