WashU epigenome browser update 2022

D Li, D Purushotham, JK Harrison, S Hsu… - Nucleic acids …, 2022 - academic.oup.com
WashU Epigenome Browser ( https://epigenomegateway.wustl.edu/browser/ ) is a web-based
genomic data exploration tool that provides visualization, integration, and analysis of …

[HTML][HTML] Uropathogenic Escherichia coli infection-induced epithelial trained immunity impacts urinary tract disease outcome

SK Russell, JK Harrison, BS Olson, HJ Lee… - Nature …, 2023 - nature.com
Previous urinary tract infections (UTIs) can predispose one to future infections; however, the
underlying mechanisms affecting recurrence are poorly understood. We previously found …

[HTML][HTML] A genome-wide CRISPR-Cas9 knockout screen identifies essential and growth-restricting genes in human trophoblast stem cells

…, B Chew, LA Fischer, X Xing, JK Harrison… - Nature …, 2022 - nature.com
The recent derivation of human trophoblast stem cells (hTSCs) provides a scalable in vitro
model system of human placental development, but the molecular regulators of hTSC identity …

Exploring genomic data coupled with 3D chromatin structures using the WashU Epigenome Browser

D Li, JK Harrison, D Purushotham, T Wang - Nature Methods, 2022 - nature.com
To the Editor—Three-dimensional (3D) genomic structures are vital for gene regulation and
cell function1. High-throughput technologies based on chromosome conformation capture …

miR‐133a Replacement Attenuates Thoracic Aortic Aneurysm in Mice

…, AR Peterson, LB Collins, JK Harrison… - Journal of the …, 2021 - Am Heart Assoc
Background Thoracic aortic aneurysms (TAAs) occur because of abnormal remodeling of
aortic extracellular matrix and are accompanied by the emergence of proteolytically active …

Comparing genomic and epigenomic features across species using the WashU Comparative Epigenome Browser

…, D Purushotham, PK Kuntala, JK Harrison… - Genome …, 2023 - genome.cshlp.org
Genome browsers have become an intuitive and critical tool to visualize and analyze genomic
features and data. Conventional genome browsers display data/annotations on a single …

[PDF][PDF] Modbed track: Visualization of modified bases in single-molecule sequencing

D Li, X Zhuo, JK Harrison, S Liu, T Wang - Cell Genomics, 2023 - cell.com
Recent advances in long-read sequencing technologies have not only dramatically increased
sequencing read length but also have improved the accuracy of detecting chemical …

MicroRNA-133a Attenuates the Development of Thoracic Aortic Aneurysm

AW Akerman, EN Collins, JK Harrison, J Oh… - Circulation …, 2019 - Am Heart Assoc
Rationale: Thoracic aortic aneurysms (TAA) result from dysregulated remodeling of the
vascular extracellular matrix, and may occur as result of altered resident cellular phenotype. …

[HTML][HTML] Landscape of somatic single nucleotide variants and indels in colorectal cancer and impact on survival

SH Zaidi, TA Harrison, AI Phipps, R Steinfelder… - Nature …, 2020 - nature.com
Colorectal cancer (CRC) is a biologically heterogeneous disease. To characterize its
mutational profile, we conduct targeted sequencing of 205 genes for 2,105 CRC cases with …

[HTML][HTML] Liver toxicity associated with sofosbuvir, an NS5A inhibitor and ribavirin use

JK Dyson, J Hutchinson, L Harrison, O Rotimi… - Journal of …, 2016 - Elsevier
Hepatitis C virus (HCV) infection is a major cause of end-stage liver disease and hepatocellular
carcinoma. There have been rapid advances in HCV treatment with the development of …