User profiles for João A. Paulo

Joao A Paulo

Instructor in Cell Biology, Harvard Medical School
Verified email at hms.harvard.edu
Cited by 18360

[PDF][PDF] The BioPlex network: a systematic exploration of the human interactome

…, ME Sowa, P De Camilli, JA Paulo… - Cell, 2015 - cell.com
Protein interactions form a network whose structure drives cellular function and whose
organization informs biological inquiry. Using high-throughput affinity-purification mass …

Autophagy promotes immune evasion of pancreatic cancer by degrading MHC-I

…, EY Lin, SJ Parker, RS Banh, JA Paulo… - Nature, 2020 - nature.com
Immune evasion is a major obstacle for cancer treatment. Common mechanisms of evasion
include impaired antigen presentation caused by mutations or loss of heterozygosity of the …

TMTpro reagents: a set of isobaric labeling mass tags enables simultaneous proteome-wide measurements across 16 samples

…, RD Bomgarden, JC Rogers, SP Gygi, JA Paulo - Nature …, 2020 - nature.com
Isobaric labeling empowers proteome-wide expression measurements simultaneously
across multiple samples. Here an expanded set of 16 isobaric reagents based on an isobutyl-…

Streamlined tandem mass tag (SL-TMT) protocol: an efficient strategy for quantitative (phospho) proteome profiling using tandem mass tag-synchronous precursor …

…, Q Yu, SP Gygi, JA Paulo - Journal of proteome …, 2018 - ACS Publications
Mass spectrometry (MS) coupled toisobaric labeling has developed rapidly into a powerful
strategy for high-throughput protein quantification. Sample multiplexing and exceptional …

[HTML][HTML] An ancient, unified mechanism for metformin growth inhibition in C. elegans and cancer

L Wu, B Zhou, N Oshiro-Rapley, M Li, JA Paulo… - Cell, 2016 - cell.com
Metformin has utility in cancer prevention and treatment, though the mechanisms for these
effects remain elusive. Through genetic screening in C. elegans, we uncover two metformin …

A triple knockout (TKO) proteomics standard for diagnosing ion interference in isobaric labeling experiments

JA Paulo, JD O'Connell, SP Gygi - Journal of the American …, 2016 - ACS Publications
Isobaric labeling is a powerful strategy for quantitative mass spectrometry-based proteomic
investigations. A complication of such analyses has been the co-isolation of multiple analytes …

Characterization and optimization of multiplexed quantitative analyses using high-field asymmetric-waveform ion mobility mass spectrometry

…, V Zabrouskov, JJ Dunyach, JA Paulo… - Analytical …, 2019 - ACS Publications
Multiplexed, isobaric tagging methods are powerful techniques to increase throughput,
precision, and accuracy in quantitative proteomics. The dynamic range and accuracy of …

Automatic forest fire danger rating calibration: Exploring clustering techniques for regionally customizable fire danger classification

JSS Júnior, JR Paulo, J Mendes, D Alves… - Expert Systems with …, 2022 - Elsevier
Effective wildfire management begins with fire prevention and the assessment of the local fire
danger. Typical approaches to fire danger classification rely heavily on manual analysis for …

Architecture of the human interactome defines protein communities and disease networks

EL Huttlin, RJ Bruckner, JA Paulo, JR Cannon, L Ting… - Nature, 2017 - nature.com
The physiology of a cell can be viewed as the product of thousands of proteins acting in
concert to shape the cellular response. Coordination is achieved in part through networks of …

[PDF][PDF] The PINK1-PARKIN mitochondrial ubiquitylation pathway drives a program of OPTN/NDP52 recruitment and TBK1 activation to promote mitophagy

JM Heo, A Ordureau, JA Paulo, J Rinehart, JW Harper - Molecular cell, 2015 - cell.com
Damaged mitochondria are detrimental to cellular homeostasis. One mechanism for
removal of damaged mitochondria involves the PINK1-PARKIN pathway, which poly-ubiquitylates …