User profiles for João Carlos Setubal

João Carlos Setubal

Professor of Bioinformatics, University of Sao Paulo
Verified email at iq.usp.br
Cited by 19438

Comparative Genomics of Two Leptospira interrogans Serovars Reveals Novel Insights into Physiology and Pathogenesis

…, LEA Camargo, JP Kitajima, JC Setubal… - Journal of …, 2004 - Am Soc Microbiol
Leptospira species colonize a significant proportion of rodent populations worldwide and
produce life-threatening infections in accidental hosts, including humans. Complete genome …

Comparative Analyses of the Complete Genome Sequences of Pierce's Disease and Citrus Variegated Chlorosis Strains of Xylella fastidiosa

…, AJG Simpson, NF Almeida Jr, JC Setubal… - Journal of …, 2003 - Am Soc Microbiol
Xylella fastidiosa is a xylem-dwelling, insect-transmitted, gamma-proteobacterium that causes
diseases in many plants, including grapevine, citrus, periwinkle, almond, oleander, and …

The Candidatus Liberibacter–Host Interface: Insights into Pathogenesis Mechanisms and Disease Control

N Wang, EA Pierson, JC Setubal, J Xu… - Annual review of …, 2017 - annualreviews.org
“Candidatus Liberibacter” species are associated with economically devastating diseases
of citrus, potato, and many other crops. The importance of these diseases as well as the …

[PDF][PDF] Butyrate protects mice from Clostridium difficile-induced colitis through an HIF-1-dependent mechanism

…, SES Guima, AM Thomas, JC Setubal… - Cell reports, 2019 - cell.com
Antibiotic-induced dysbiosis is a key factor predisposing intestinal infection by Clostridium
difficile. Here, we show that interventions that restore butyrate intestinal levels mitigate clinical …

[HTML][HTML] Genome features of Leptospira interrogans serovar Copenhageni

…, MV Marques, MC Oliveira, JC Setubal… - Brazilian Journal of …, 2004 - SciELO Brasil
We report novel features of the genome sequence of Leptospira interrogans serovar
Copenhageni, a highly invasive spirochete. Leptospira species colonize a significant proportion of …

[HTML][HTML] Microbial community structure and dynamics in thermophilic composting viewed through metagenomics and metatranscriptomics

…, RC Pascon, JB Cruz, AM Da Silva, JC Setubal - Scientific reports, 2016 - nature.com
Composting is a promising source of new organisms and thermostable enzymes that may be
helpful in environmental management and industrial processes. Here we present results of …

Comparative genomic analysis of plant-associated bacteria

…, JA Ferro, MC Oliveira, JC Setubal… - Annual review of …, 2002 - annualreviews.org
▪ Abstract This review deals with a comparative analysis of seven genome sequences from
plant-associated bacteria. These are the genomes of Agrobacterium tumefaciens, …

The genome sequence of the plant pathogen Xylella fastidiosa

…, AL Vettore, MA Zago, M Zatz, J Meidanis, JC Setubal - Nature, 2000 - nature.com
Xylella fastidiosa is a fastidious, xylem-limited bacterium that causes a range of economically
important plant diseases. Here we report the complete genome sequence of X. fastidiosa …

Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation

…, P Bork, G Zeller, F Cordero, E Dias-Neto, JC Setubal… - Nature medicine, 2019 - nature.com
Several studies have investigated links between the gut microbiome and colorectal cancer (CRC),
but questions remain about the replicability of biomarkers across cohorts and …

[BOOK][B] Introduction to computational molecular biology

JC Setubal, J Meidanis, . ̤ Setubal-Meidanis - 1997 - ndl.ethernet.edu.et
Ever since the structure of DNA was unraveled in 1953, molecular biology has witnessed
tremendous advances. With the increase in our ability to manipulate biomolecular sequences, …