User profiles for Joel F. Gibson

Joel Gibson

Curator of Entomology, Royal BC Museum
Verified email at royalbcmuseum.bc.ca
Cited by 3058

Next‐generation sequencing technologies for environmental DNA research

S Shokralla, JL Spall, JF Gibson… - Molecular …, 2012 - Wiley Online Library
Since 2005, advances in next‐generation sequencing technologies have revolutionized
biological science. The analysis of environmental DNA through the use of specific gene markers …

Next‐generation DNA barcoding: using next‐generation sequencing to enhance and accelerate DNA barcode capture from single specimens

S Shokralla, JF Gibson, H Nikbakht… - Molecular ecology …, 2014 - Wiley Online Library
DNA barcoding is an efficient method to identify specimens and to detect undescribed/cryptic
species. Sanger sequencing of individual specimens is the standard approach in …

[HTML][HTML] Massively parallel multiplex DNA sequencing for specimen identification using an Illumina MiSeq platform

S Shokralla, TM Porter, JF Gibson, R Dobosz… - Scientific reports, 2015 - nature.com
Genetic information is a valuable component of biosystematics, especially specimen
identification through the use of species-specific DNA barcodes. Although many genomics …

[HTML][HTML] Large-scale biomonitoring of remote and threatened ecosystems via high-throughput sequencing

JF Gibson, S Shokralla, C Curry, DJ Baird, WA Monk… - PloS one, 2015 - journals.plos.org
Biodiversity metrics are critical for assessment and monitoring of ecosystems threatened by
anthropogenic stressors. Existing sorting and identification methods are too expensive and …

Identifying North American freshwater invertebrates using DNA barcodes: are existing COI sequence libraries fit for purpose?

CJ Curry, JF Gibson, S Shokralla… - Freshwater …, 2018 - journals.uchicago.edu
We reviewed the availability of cytochrome c oxidase subunit I (COI) sequences for 2534
North American freshwater invertebrate genera in public databases (GenBank and Barcode of …

Diptera-specific polymerase chain reaction amplification primers of use in molecular phylogenetic research

JF Gibson, S Kelso, MD Jackson, JH Kits… - Annals of the …, 2011 - academic.oup.com
DNA sequence data from a variety of mitochondrial and nuclear gene regions are
significant components of phylogenetic research in entomology. Polymerase chain reaction (PCR) …

Rapid and accurate taxonomic classification of insect (class Insecta) cytochrome c oxidase subunit 1 (COI) DNA barcode sequences using a naïve Bayesian classifier

TM Porter, JF Gibson, S Shokralla… - Molecular Ecology …, 2014 - Wiley Online Library
Current methods to identify unknown insect (class Insecta) cytochrome c oxidase ( COI barcode)
sequences often rely on thresholds of distances that can be difficult to define, sequence …

Placement of Conopidae (Diptera) within Schizophora based on mtDNA and nrDNA gene regions

JF Gibson, JH Skevington, S Kelso - Molecular Phylogenetics and …, 2010 - Elsevier
The first attempt to phylogenetically place Conopidae using molecular characters, as well
as the largest molecular analysis of relationships within Schizophora (Diptera) to date, is …

Linking DNA metabarcoding and text mining to create network-based biomonitoring tools: A case study on boreal wetland macroinvertebrate communities

…, M Hajibabaei, S Shokralla, JF Gibson… - Advances in ecological …, 2018 - Elsevier
Ecological networks are powerful tools for visualizing biodiversity data and assessing ecosystem
health and function. Constructing these networks requires considerable empirical efforts…

Discrimination of grasshopper (O rthoptera: A crididae) diet and niche overlap using next‐generation sequencing of gut contents

B McClenaghan, JF Gibson, S Shokralla… - Ecology and …, 2015 - Wiley Online Library
Species of grasshopper have been divided into three diet classifications based on mandible
morphology: forbivorous (specialist on forbs), graminivorous (specialist on grasses), and …