User profiles for Johan Elf

Johan Elf

Professor Physical Biology, Uppsala University
Verified email at icm.uu.se
Cited by 12018

Probing transcription factor dynamics at the single-molecule level in a living cell

J Elf, GW Li, XS Xie - Science, 2007 - science.org
Transcription factors regulate gene expression through their binding to DNA. In a living
Escherichia coli cell, we directly observed specific binding of a lac repressor, labeled with a …

The lac Repressor Displays Facilitated Diffusion in Living Cells

…, P Leroy, A Mahmutovic, EG Marklund, OG Berg, J Elf - Science, 2012 - science.org
Transcription factors (TFs) are proteins that regulate the expression of genes by binding
sequence-specific sites on the chromosome. It has been proposed that to find these sites fast …

Antibiotic susceptibility testing in less than 30 min using direct single-cell imaging

…, E Tano, DI Andersson, J Elf - Proceedings of the …, 2017 - National Acad Sciences
The emergence and spread of antibiotic-resistant bacteria are aggravated by incorrect
prescription and use of antibiotics. A core problem is that there is no sufficiently fast diagnostic test …

Single-molecule investigations of the stringent response machinery in living bacterial cells

…, S Tankov, NH Dekker, J Elf - Proceedings of the …, 2011 - National Acad Sciences
The RelA-mediated stringent response is at the heart of bacterial adaptation to starvation
and stress, playing a major role in the bacterial cell cycle and virulence. RelA integrates …

SBML Level 3: an extensible format for the exchange and reuse of biological models

…, D Drasdo, A Ebrahim, J Eichner, J Elf… - Molecular systems …, 2020 - embopress.org
Abstract Systems biology has experienced dramatic growth in the number, size, and
complexity of computational models. To reproduce simulation results and reuse models, …

Single-molecule kinetics in living cells

J Elf, I Barkefors - Annual review of biochemistry, 2019 - annualreviews.org
In the past decades, advances in microscopy have made it possible to study the dynamics of
individual biomolecules in vitro and resolve intramolecular kinetics that would otherwise be …

Nanometer resolution imaging and tracking of fluorescent molecules with minimal photon fluxes

…, KC Gwosch, AH Gynnå, V Westphal, FD Stefani, J Elf… - Science, 2017 - science.org
We introduce MINFLUX, a concept for localizing photon emitters in space. By probing the
emitter with a local intensity minimum of excitation light, MINFLUX minimizes the fluorescence …

Spontaneous separation of bi-stable biochemical systems into spatial domains of opposite phases

J Elf, M Ehrenberg - Systems biology, 2004 - IET
Bi-stable chemical systems are the basic building blocks for intracellular memory and cell
fate decision circuits. These circuits are built from molecules, which are present at low copy …

Selective charging of tRNA isoacceptors induced by amino‐acid starvation

KA Dittmar, MA Sørensen, J Elf, M Ehrenberg… - EMBO reports, 2005 - embopress.org
Aminoacylated (charged) transfer RNA isoacceptors read different messenger RNA codons
for the same amino acid. The concentration of an isoacceptor and its charged fraction are …

RNAs actively cycle on the Sm-like protein Hfq

A Fender, J Elf, K Hampel, B Zimmermann… - Genes & …, 2010 - genesdev.cshlp.org
Hfq, a protein required for small RNA (sRNA)-mediated regulation in bacteria, binds RNA
with low-nanomolar K d values and long half-lives of complexes (>100 min). This cannot be …