[HTML][HTML] Functional tradeoffs underpin salinity-driven divergence in microbial community composition
…, K Ininbergs, J Goll, J Asplund-Samuelsson… - PloS one, 2014 - journals.plos.org
Bacterial community composition and functional potential change subtly across gradients in
the surface ocean. In contrast, while there are significant phylogenetic divergences between …
the surface ocean. In contrast, while there are significant phylogenetic divergences between …
[HTML][HTML] Pooled CRISPRi screening of the cyanobacterium Synechocystis sp PCC 6803 for enhanced industrial phenotypes
…, SM Björk, J Asplund-Samuelsson… - Nature …, 2020 - nature.com
Cyanobacteria are model organisms for photosynthesis and are attractive for biotechnology
applications. To aid investigation of genotype-phenotype relationships in cyanobacteria, we …
applications. To aid investigation of genotype-phenotype relationships in cyanobacteria, we …
Protein allocation and utilization in the versatile chemolithoautotroph Cupriavidus necator
…, A Mattausch, Q Chen, J Asplund-Samuelsson… - Elife, 2021 - elifesciences.org
Bacteria must balance the different needs for substrate assimilation, growth functions, and
resilience in order to thrive in their environment. Of all cellular macromolecules, the bacterial …
resilience in order to thrive in their environment. Of all cellular macromolecules, the bacterial …
Kinetic modeling of the Calvin cycle identifies flux control and stable metabolomes in Synechocystis carbon fixation
M Janasch, J Asplund-Samuelsson… - Journal of …, 2019 - academic.oup.com
Biological fixation of atmospheric CO 2 via the Calvin–Benson–Bassham cycle has massive
ecological impact and offers potential for industrial exploitation, either by improving carbon …
ecological impact and offers potential for industrial exploitation, either by improving carbon …
[HTML][HTML] Prokaryotic caspase homologs: phylogenetic patterns and functional characteristics reveal considerable diversity
J Asplund-Samuelsson, B Bergman, J Larsson - PLoS One, 2012 - journals.plos.org
Caspases accomplish initiation and execution of apoptosis, a programmed cell death
process specific to metazoans. The existence of prokaryotic caspase homologs, termed …
process specific to metazoans. The existence of prokaryotic caspase homologs, termed …
[HTML][HTML] Thermodynamic analysis of computed pathways integrated into the metabolic networks of E. coli and Synechocystis reveals contrasting expansion potential
J Asplund-Samuelsson, M Janasch, EP Hudson - Metabolic engineering, 2018 - Elsevier
Introducing biosynthetic pathways into an organism is both reliant on and challenged by
endogenous biochemistry. Here we compared the expansion potential of the metabolic network …
endogenous biochemistry. Here we compared the expansion potential of the metabolic network …
[HTML][HTML] Dissection of microbial community functions during a cyanobacterial bloom in the Baltic Sea via metatranscriptomics
Marine and brackish surface waters are highly dynamic habitats that undergo repeated
seasonal variations in microbial community composition and function throughout time. While …
seasonal variations in microbial community composition and function throughout time. While …
[HTML][HTML] Thermodynamic limitations of PHB production from formate and fructose in Cupriavidus necator
M Janasch, N Crang, J Asplund-Samuelsson… - Metabolic …, 2022 - Elsevier
The chemolithotroph Cupriavidus necator H16 is known as a natural producer of the
bioplastic-polymer PHB, as well as for its metabolic versatility to utilize different substrates, including …
bioplastic-polymer PHB, as well as for its metabolic versatility to utilize different substrates, including …
[HTML][HTML] Diversity and expression of bacterial metacaspases in an aquatic ecosystem
J Asplund-Samuelsson, J Sundh, CL Dupont… - Frontiers in …, 2016 - frontiersin.org
Metacaspases are distant homologs of metazoan caspase proteases, implicated in stress
response, and programmed cell death (PCD) in bacteria and phytoplankton. While the few …
response, and programmed cell death (PCD) in bacteria and phytoplankton. While the few …
[HTML][HTML] Wide range of metabolic adaptations to the acquisition of the Calvin cycle revealed by comparison of microbial genomes
J Asplund-Samuelsson, EP Hudson - PLOS Computational …, 2021 - journals.plos.org
Knowledge of the genetic basis for autotrophic metabolism is valuable since it relates to both
the emergence of life and to the metabolic engineering challenge of incorporating CO 2 as …
the emergence of life and to the metabolic engineering challenge of incorporating CO 2 as …