Estimating the number of species in a stochastic abundance model

A Chao, J Bunge - Biometrics, 2002 - Wiley Online Library
Consider a stochastic abundance model in which the species arrive in the sample according
to independent Poisson processes, where the abundance parameters of the processes …

Estimating the number of species: a review

J Bunge, M Fitzpatrick - Journal of the American statistical …, 1993 - Taylor & Francis
How many kinds are there? Suppose that a population is partitioned into C classes. In many
situations interest focuses not on estimation of the relative sizes of the classes, but on …

Estimating diversity via frequency ratios

A Willis, J Bunge - Biometrics, 2015 - academic.oup.com
We wish to estimate the total number of classes in a population based on sample counts,
especially in the presence of high latent diversity. Drawing on probability theory that …

Polymerase chain reaction primers miss half of rRNA microbial diversity

SH Hong, J Bunge, C Leslin, S Jeon… - The ISME …, 2009 - academic.oup.com
The rRNA approach is the principal tool to study microbial diversity, but it has important biases.
These include polymerase chain reaction (PCR) primers bias, and relative inefficiency of …

Microbial community structure in the North Pacific ocean

MV Brown, GK Philip, JA Bunge, MC Smith… - The ISME …, 2009 - academic.oup.com
We report a ribosomal tag pyrosequencing study of the phylogenetic diversity of Archaea,
Bacteria and Eucarya over a depth profile at the Hawaii Ocean Time-Series Station, ALOHA. …

Parasites dominate hyperdiverse soil protist communities in Neotropical rainforests

…, E Lara, D Singer, J Mayor, J Bunge… - Nature ecology & …, 2017 - nature.com
High animal and plant richness in tropical rainforest communities has long intrigued naturalists.
It is unknown if similar hyperdiversity patterns are reflected at the microbial scale with …

Protistan microbial observatory in the Cariaco Basin, Caribbean. I. Pyrosequencing vs Sanger insights into species richness

V Edgcomb, W Orsi, J Bunge, S Jeon… - The ISME …, 2011 - academic.oup.com
Microbial diversity and distribution are topics of intensive research. In two companion papers
in this issue, we describe the results of the Cariaco Microbial Observatory (Caribbean Sea, …

Predicting microbial species richness

SH Hong, J Bunge, SO Jeon… - Proceedings of the …, 2006 - National Acad Sciences
Microorganisms are spectacularly diverse phylogenetically, but available estimates of their
species richness are vague and problematic. For example, for comparable environments, the …

Revictimization after adolescent dating violence in a matched, national sample of youth

D Exner-Cortens, J Eckenrode, J Bunge… - Journal of Adolescent …, 2017 - Elsevier
Purpose To assess if adolescent dating violence was associated with physical intimate partner
violence victimization in adulthood, using a comprehensive propensity score to create a …

Bacterial diversity in a glacier foreland of the high Arctic

…, Z Abdo, J Foster, J Ravel, J Bunge… - Molecular …, 2010 - Wiley Online Library
Over the past 100 years, Arctic temperatures have increased at almost twice the global average
rate. One consequence is the acceleration of glacier retreat, exposing new habitats that …