User profiles for John H. Gennari
 | John H GennariBiomedical & Health Informatics, University of Washington Verified email at uw.edu Cited by 9296 |
The evolution of Protégé: an environment for knowledge-based systems development
JH Gennari, MA Musen, RW Fergerson… - International Journal of …, 2003 - Elsevier
The Protégé project has come a long way since Mark Musen first built the Protégé meta-tool
for knowledge-based systems in 1987. The original tool was a small application, aimed at …
for knowledge-based systems in 1987. The original tool was a small application, aimed at …
Models of incremental concept formation
Given a set of observations, humans acquire concepts that organize those observations and
use them in classifying future experiences. This type of concept formation can occur in the …
use them in classifying future experiences. This type of concept formation can occur in the …
The guideline interchange format: a model for representing guidelines
L Ohno-Machado, JH Gennari… - Journal of the …, 1998 - academic.oup.com
Objective: To allow exchange of clinical practice guidelines among institutions and computer-based
applications. Design: The GuideLine Interchange Format (GLIF) specification …
applications. Design: The GuideLine Interchange Format (GLIF) specification …
The Synthetic Biology Open Language (SBOL) provides a community standard for communicating designs in synthetic biology
The re-use of previously validated designs is critical to the evolution of synthetic biology from
a research discipline to an engineering practice. Here we describe the Synthetic Biology …
a research discipline to an engineering practice. Here we describe the Synthetic Biology …
[HTML][HTML] Incorporating ideas from computer-supported cooperative work
Many information systems have failed when deployed into complex health-care settings. We
believe that one cause of these failures is the difficulty in systematically accounting for the …
believe that one cause of these failures is the difficulty in systematically accounting for the …
Evaluating clinical decision support systems: monitoring CPOE order check override rates in the Department of Veterans Affairs' Computerized Patient Record System
…, PJ Hoey, CL Anderson, JH Gennari - Journal of the …, 2008 - academic.oup.com
Objective: To measure critical order check override rates in VA Puget Sound Health Care
System's computerized practitioner order entry (CPOE) system and to compare 2006 results to …
System's computerized practitioner order entry (CPOE) system and to compare 2006 results to …
[HTML][HTML] Standard biological parts knowledgebase
We have created the Knowledgebase of Standard Biological Parts (SBPkb) as a publically
accessible Semantic Web resource for synthetic biology (sbolstandard.org). The SBPkb …
accessible Semantic Web resource for synthetic biology (sbolstandard.org). The SBPkb …
Sharing structure and function in biological design with SBOL 2.0
The Synthetic Biology Open Language (SBOL) is a standard that enables collaborative
engineering of biological systems across different institutions and tools. SBOL is developed …
engineering of biological systems across different institutions and tools. SBOL is developed …
Ontology-based configuration of problem-solving methods and generation of knowledge-acquisition tools: application of PROTEGE-II to protocol-based decision …
PROTÉGÉ-II is a suite of tools and a methodology for building knowledge-based systems and
domain-specific knowledge-acquisition tools. In this paper, we show how PROTÉGÉ-II can …
domain-specific knowledge-acquisition tools. In this paper, we show how PROTÉGÉ-II can …
Asynchronous collaborative writing through annotations
C Weng, JH Gennari - Proceedings of the 2004 ACM conference on …, 2004 - dl.acm.org
Annotation is central to iterative reviewing and revising activities in asynchronous collaborative
writing. Currently most digital annotation models and systems assume static context …
writing. Currently most digital annotation models and systems assume static context …