[HTML][HTML] FMRP stalls ribosomal translocation on mRNAs linked to synaptic function and autism
…, A Mele, CE Fraser, EF Stone, C Chen, JJ Fak… - Cell, 2011 - cell.com
FMRP loss of function causes Fragile X syndrome (FXS) and autistic features. FMRP is a
polyribosome-associated neuronal RNA-binding protein, suggesting that it plays a key role in …
polyribosome-associated neuronal RNA-binding protein, suggesting that it plays a key role in …
HITS-CLIP yields genome-wide insights into brain alternative RNA processing
Protein–RNA interactions have critical roles in all aspects of gene expression. However,
applying biochemical methods to understand such interactions in living tissues has been …
applying biochemical methods to understand such interactions in living tissues has been …
A majority of m6A residues are in the last exons, allowing the potential for 3′ UTR regulation
…, C Mertens, EC Gantman, JJ Fak… - Genes & …, 2015 - genesdev.cshlp.org
We adapted UV CLIP (cross-linking immunoprecipitation) to accurately locate tens of thousands
of m 6 A residues in mammalian mRNA with single-nucleotide resolution. More than 70…
of m 6 A residues in mammalian mRNA with single-nucleotide resolution. More than 70…
m6A mRNA modifications are deposited in nascent pre-mRNA and are not required for splicing but do specify cytoplasmic turnover
S Ke, A Pandya-Jones, Y Saito, JJ Fak… - Genes & …, 2017 - genesdev.cshlp.org
Understanding the biologic role of N 6 -methyladenosine (m 6 A) RNA modifications in
mRNA requires an understanding of when and where in the life of a pre-mRNA transcript the …
mRNA requires an understanding of when and where in the life of a pre-mRNA transcript the …
[PDF][PDF] Hepatitis C virus RNA functionally sequesters miR-122
Hepatitis C virus (HCV) uniquely requires the liver-specific microRNA-122 for replication,
yet global effects on endogenous miRNA targets during infection are unexplored. Here, high-…
yet global effects on endogenous miRNA targets during infection are unexplored. Here, high-…
Nucleotide control of interdomain interactions in the conformational reaction cycle of SecA
…, JJ Fak, P McNicholas, DB Oliver, J Deisenhofer - Science, 2002 - science.org
The SecA adenosine triphosphatase (ATPase) mediates extrusion of the amino termini of
secreted proteins from the eubacterial cytosol based on cycles of reversible binding to the …
secreted proteins from the eubacterial cytosol based on cycles of reversible binding to the …
[HTML][HTML] miRNA–target chimeras reveal miRNA 3′-end pairing as a major determinant of Argonaute target specificity
microRNAs (miRNAs) act as sequence-specific guides for Argonaute (AGO) proteins, which
mediate posttranscriptional silencing of target messenger RNAs. Despite their importance in …
mediate posttranscriptional silencing of target messenger RNAs. Despite their importance in …
Integrative modeling defines the Nova splicing-regulatory network and its combinatorial controls
…, T Eom, CB Marney, H Wang, DD Licatalosi, JJ Fak… - Science, 2010 - science.org
The control of RNA alternative splicing is critical for generating biological diversity. Despite
emerging genome-wide technologies to study RNA complexity, reliable and comprehensive …
emerging genome-wide technologies to study RNA complexity, reliable and comprehensive …
Whole-genome deep-learning analysis identifies contribution of noncoding mutations to autism risk
…, AK Wong, Y Yuan, C Scheckel, JJ Fak, J Funk… - Nature …, 2019 - nature.com
We address the challenge of detecting the contribution of noncoding mutations to disease
with a deep-learning-based framework that predicts the specific regulatory effects and the …
with a deep-learning-based framework that predicts the specific regulatory effects and the …
[PDF][PDF] Neuronal Elav-like (Hu) proteins regulate RNA splicing and abundance to control glutamate levels and neuronal excitability
The paraneoplastic neurologic disorders target several families of neuron-specific RNA
binding proteins (RNABPs), revealing that there are unique aspects of gene expression …
binding proteins (RNABPs), revealing that there are unique aspects of gene expression …