[HTML][HTML] Comparative fecal metagenomics unveils unique functional capacity of the swine gut

…, JW Santo Domingo, S Ghosh, J Martinson… - BMC microbiology, 2011 - Springer
Background Uncovering the taxonomic composition and functional capacity within the swine
gut microbial consortia is of great importance to animal physiology and health as well as to …

Comparing predicted estrogen concentrations with measurements in US waters

M Kostich, R Flick, J Martinson - Environmental Pollution, 2013 - Elsevier
The range of exposure rates to the steroidal estrogens estrone (E1), beta-estradiol (E2), estriol
(E3), and ethinyl estradiol (EE2) in the aquatic environment was investigated by modeling …

[HTML][HTML] Sensitivity and accuracy of high-throughput metabarcoding methods for early detection of invasive fish species

C Hatzenbuhler, JR Kelly, J Martinson, S Okum… - Scientific reports, 2017 - nature.com
High-throughput DNA metabarcoding has gained recognition as a potentially powerful tool
for biomonitoring, including early detection of aquatic invasive species (AIS). DNA based …

[HTML][HTML] Evaluating the performance of DNA metabarcoding for assessment of zooplankton communities in Western Lake Superior using multiple markers

…, A Trebitz, E Pilgrim, S Okum, J Martinson… - Metabarcoding and …, 2021 - ncbi.nlm.nih.gov
For DNA metabarcoding to attain its potential as a community assessment tool, we need to
better understand its performance versus traditional morphological identification and work to …

Ballast water exchange and invasion risk posed by intracoastal vessel traffic: an evaluation using high throughput sequencing

JA Darling, J Martinson, Y Gong, S Okum… - … science & technology, 2018 - ACS Publications
Ballast water remains a potent vector of non-native aquatic species introductions, despite
increased global efforts to reduce risk of ballast water mediated invasions. This is particularly …

Genetic basis for rapidly evolved tolerance in the wild: adaptation to toxic pollutants by an estuarine fish species

…, D Proestou, D Champlin, J Martinson… - Molecular …, 2016 - Wiley Online Library
Atlantic killifish (Fundulus heteroclitus) residing in some urban and industrialized estuaries
of the US eastern seaboard demonstrate recently evolved and extreme tolerance to toxic aryl …

De novo assembly of the nearly complete fathead minnow reference genome reveals a repetitive but compact genome

JW Martinson, DC Bencic, GP Toth… - Environmental …, 2022 - Wiley Online Library
The fathead minnow is a widely used model organism in environmental toxicology. The lack
of a high‐quality fathead minnow reference genome, however, has severely hampered its …

[HTML][HTML] Pilot testing and optimization of a larval fathead minnow high throughput transcriptomics assay

…, DC Bencic, K Bush, R Flick, J Martinson… - Current Research in …, 2023 - Elsevier
Concentrations at which global gene expression profiles in cells or animals exposed to a
test substance start to differ significantly from those of controls have been proposed as an …

[HTML][HTML] Expression profiles during dedifferentiation in newt lens regeneration revealed by expressed sequence tags

N Maki, J Martinson, O Nishimura, H Tarui… - Molecular …, 2010 - ncbi.nlm.nih.gov
Purpose The adult newt can regenerate lens from pigmented epithelial cells (PECs) of the
dorsal iris via dedifferentiation. The purpose of this research is to obtain sequence resources …

[HTML][HTML] Developing indicators of nutrient pollution in streams using 16S rRNA gene metabarcoding of periphyton-associated bacteria

EM Pilgrim, NJ Smucker, H Wu, J Martinson, CT Nietch… - Water, 2022 - mdpi.com
Indicators based on nutrient-biota relationships in streams can inform water quality restoration
and protection programs. Bacterial assemblages could be particularly useful indicators of …