Virus genomes reveal factors that spread and sustained the Ebola epidemic

…, F Bielejec, SL Caddy, M Cotten, J D'Ambrozio… - Nature, 2017 - nature.com
The 2013–2016 West African epidemic caused by the Ebola virus was of unprecedented
magnitude, duration and impact. Here we reconstruct the dispersal, proliferation and decline of …

[PDF][PDF] Epitope-resolved profiling of the SARS-CoV-2 antibody response identifies cross-reactivity with endemic human coronaviruses

…, ZW Fink, F Rahee, J D'ambrozio… - Cell Reports …, 2021 - cell.com
The SARS-CoV-2 proteome shares regions of conservation with endemic human coronaviruses
(CoVs), but it remains unknown to what extent these may be cross-recognized by the …

Impact of fluoroquinolone resistance mutations on gonococcal fitness and in vivo selection for compensatory mutations

…, AA Begum, H Wu, JA D'Ambrozio… - The Journal of …, 2012 - academic.oup.com
Background. Quinolone-resistant Neisseria gonorrhoeae (QRNG) arise from mutations in gyrA
(intermediate resistance) or gyrA and parC (resistance). Here we tested the consequence …

[HTML][HTML] Genome-wide estimates of genetic diversity, inbreeding and effective size of experimental and commercial rainbow trout lines undergoing selective breeding

J D'ambrosio, F Phocas, P Haffray, A Bestin… - Genetics Selection …, 2019 - Springer
Background Selective breeding is a relatively recent practice in aquaculture species
compared to terrestrial livestock. Nevertheless, the genetic variability of farmed salmonid lines, …

Reduced evolutionary rate in reemerged Ebola virus transmission chains

…, T Lo, ML Gilbert, C Gregory, J D'ambrozio… - Science …, 2016 - science.org
On 29 June 2015, Liberia’s respite from Ebola virus disease (EVD) was interrupted for the
second time by a renewed outbreak (“flare-up”) of seven confirmed cases. We demonstrate …

[HTML][HTML] Genetic architecture and genomic selection of female reproduction traits in rainbow trout

J D'Ambrosio, R Morvezen, S Brard-Fudulea, A Bestin… - BMC genomics, 2020 - Springer
Background Rainbow trout is a significant fish farming species under temperate climates.
Female reproduction traits play an important role in the economy of breeding companies with …

[HTML][HTML] Genetic parameters and genome-wide association studies of quality traits characterised using imaging technologies in Rainbow trout, Oncorhynchus mykiss

C Blay, P Haffray, J Bugeon, J D'ambrosio… - Frontiers in …, 2021 - frontiersin.org
One of the top priorities of the aquaculture industry is the genetic improvement of economically
important traits in fish, such as those related to processing and quality. However, the …

Rainbow trout resistance to bacterial cold water disease: two new quantitative trait loci identified after a natural disease outbreak on a French farm

C Fraslin, S Brard‐Fudulea, J d'Ambrosio… - Animal …, 2019 - Wiley Online Library
In rainbow trout farming, Flavobacterium psychrophilum, the causative agent of bacterial
cold water disease, is responsible for important economic losses. Resistance to F. …

Temporal and region‐specific variations in genome‐wide inbreeding effects on female size and reproduction traits of rainbow trout

K Paul, J D'Ambrosio, F Phocas - Evolutionary Applications, 2022 - Wiley Online Library
Recent studies have shown that current levels of inbreeding, estimated by runs of homozygosity
(ROH), are moderate to high in farmed rainbow trout lines. Based on ROH metrics, the …

[HTML][HTML] Genetic architecture of acute hyperthermia resistance in juvenile rainbow trout (Oncorhynchusmykiss) and genetic correlations with production traits

…, M Prchal, Y François, J D'ambrosio… - Genetics Selection …, 2023 - Springer
Background Selective breeding is a promising solution to reduce the vulnerability of fish
farms to heat waves, which are predicted to increase in intensity and frequency. However, …